Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20831
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0186 + 20754045-20754692,20754772-20755057,20756160-20756668     29   3.9  
01_06_1489 + 37728539-37729496,37730362-37730900                       29   3.9  
05_05_0166 + 22864387-22865010,22866215-22866500,22867485-22868035     28   5.2  
01_06_1231 - 35579409-35579965,35580147-35580432,35580986-35581636     27   9.0  

>02_04_0186 + 20754045-20754692,20754772-20755057,20756160-20756668
          Length = 480

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 616 NSEKWKFXLPLWFQLSFTVVIFSL 545
           N + W   +PLW   S+TV  FSL
Sbjct: 159 NIKAWMAFVPLWITFSYTVCAFSL 182


>01_06_1489 + 37728539-37729496,37730362-37730900
          Length = 498

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 616 NSEKWKFXLPLWFQLSFTVVIFSL 545
           N + W   +PLW   S+TV  FSL
Sbjct: 167 NIKAWMLFVPLWLTFSYTVGAFSL 190


>05_05_0166 + 22864387-22865010,22866215-22866500,22867485-22868035
          Length = 486

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 616 NSEKWKFXLPLWFQLSFTVVIFSL 545
           N + W    PLW  LS+TV  FSL
Sbjct: 151 NIKAWMAFTPLWLLLSYTVGAFSL 174


>01_06_1231 - 35579409-35579965,35580147-35580432,35580986-35581636
          Length = 497

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 616 NSEKWKFXLPLWFQLSFTVVIFSL 545
           N + W    PLW   S+TV  FSL
Sbjct: 160 NIKAWMAFTPLWLLFSYTVCAFSL 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,232,205
Number of Sequences: 37544
Number of extensions: 238061
Number of successful extensions: 363
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)