Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20831
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_59641| Best HMM Match : PAE (HMM E-Value=0)                         28   7.0  
SB_54691| Best HMM Match : SWIRM (HMM E-Value=0.0033)                  27   9.2  
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            27   9.2  

>SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -2

Query: 251 GITGCIQGAKGTGYGFYLNTYNFYCLGSGRAHRPLGVKRSSEPMDINNVNSATY-LKT*D 75
           G + C Q    +G   + N Y  + +G+  A R   +KRS  PM+ +   S ++  K   
Sbjct: 509 GASACAQVTNSSG--MHENVYESFAIGTSTAQRSNTLKRSGVPMNSDMSLSCSFPEKIPR 566

Query: 74  LSHS 63
           LSHS
Sbjct: 567 LSHS 570


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 348  SIDCESK*AYKDEFVKCLFISIVLVTCT*LSVRNNRLYTG-CKG 220
            S+DC +   + +E  +  F  I+  T T  S++NN LY+  C G
Sbjct: 1250 SLDCANVCVFHNEIFENGFWGIIAKTKTSASIQNNELYSNKCGG 1293


>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
          Length = 1252

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 272 VTNTIEINKHFTNSSL*AYLDS 337
           VT T+E  KH TN S+ +YL++
Sbjct: 12  VTKTLEARKHLTNHSVPSYLET 33


>SB_54691| Best HMM Match : SWIRM (HMM E-Value=0.0033)
          Length = 809

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 515 RGSNENNKDIFIISFFI*NKYNHIMKFXLKLMFMNNMATAIDFEIKNKKNDF 360
           R ++E N+D+  I+  + N Y  I     KL        ++  EIK+ ++DF
Sbjct: 568 RWASEQNQDLARINSHLDNLYAQINPLEAKLKSSEERCQSLQKEIKSLEDDF 619


>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 515 RGSNENNKDIFIISFFI*NKYNHIMKFXLKLMFMNNMATAIDFEIKNKKNDF 360
           R ++E N+D+  I+  + N Y  I     KL        ++  EIK+ ++DF
Sbjct: 495 RWASEQNQDLARINSHLDNLYAQINPLEAKLKSSEERCQSLQKEIKSLEDDF 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,773
Number of Sequences: 59808
Number of extensions: 294110
Number of successful extensions: 422
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)