Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20831
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29095-7|CAA82352.2|  319|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF067936-5|AAC19211.1|  430|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z29095-7|CAA82352.2|  319|Caenorhabditis elegans Hypothetical
           protein R10E11.7 protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +2

Query: 224 LHPVYSLLFLTLNYVQVTNTIEINKHFTNSSL*AY 328
           LHP+ +L+ +T+N + V  +++ ++ FT+S +  Y
Sbjct: 96  LHPMLTLILMTINRIAVVVSMQASQLFTSSKIWLY 130


>AF067936-5|AAC19211.1|  430|Caenorhabditis elegans Hypothetical
           protein C24G6.2b protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 488 IFIISFFI*NKYNHI-MKFXLKLMFMNNMATAIDFEIKNKKND 363
           I +I F+   K  ++  KF ++ +  NNM   IDF I   KND
Sbjct: 17  IVVIWFYFRKKSENMKFKFQMEQVGKNNMNRYIDFPIMAAKND 59


>AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical
           protein C24G6.2a protein.
          Length = 903

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 488 IFIISFFI*NKYNHI-MKFXLKLMFMNNMATAIDFEIKNKKND 363
           I +I F+   K  ++  KF ++ +  NNM   IDF I   KND
Sbjct: 490 IVVIWFYFRKKSENMKFKFQMEQVGKNNMNRYIDFPIMAAKND 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,541
Number of Sequences: 27780
Number of extensions: 237347
Number of successful extensions: 529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)