Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20831
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 344 IEFNLRNHFFYFLFQ 388
           + FNL+ H  YFL Q
Sbjct: 236 VSFNLQRHTGYFLIQ 250


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 293 NKHFTNSSL*AYLDSQSIEFNLRN 364
           N+ +TN S  +  D  SI+F+  N
Sbjct: 210 NRLYTNDSTSSKTDDDSIDFDRMN 233


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 293 NKHFTNSSL*AYLDSQSIEFNLRN 364
           N+ +TN S  +  D  SI+F+  N
Sbjct: 248 NRLYTNDSTSSKTDDDSIDFDRMN 271


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 60  KTVT*ISGLKVRCGIYVVDVHGLR*PLNTKWSVSSS 167
           +T+  I+GLKV+  I  + VHG   PL  ++ ++ S
Sbjct: 347 ETLQAITGLKVKRRISFILVHGF--PLEYEYVLAVS 380


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 290 INKHFTNS 313
           +NKHFTNS
Sbjct: 207 LNKHFTNS 214


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 290 INKHFTNS 313
           +NKHFTNS
Sbjct: 207 LNKHFTNS 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,013
Number of Sequences: 438
Number of extensions: 2915
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)