Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20826
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   2.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.6  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   6.0  
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    21   6.0  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.9  

>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = -3

Query: 350 FAAVYTLPVLVF 315
           F+A+Y+LP+L+F
Sbjct: 149 FSALYSLPILIF 160


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 265 LSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNL 396
           LSG +SQ+ G  G+  S +   S+  +      YG+ ++  S L
Sbjct: 9   LSGVVSQINGNSGD--STSSATSIDLSTFRVPTYGTTSHPTSKL 50


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 265 LSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNL 396
           LSG +SQ+ G  G+  S +   S+  +      YG+ ++  S L
Sbjct: 9   LSGVVSQINGNSGD--STSSATSIDLSTFRVPTYGTTSHPTSKL 50


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 417 RNVLDNAHSSLLSN 458
           RN+LDN +  +LSN
Sbjct: 455 RNLLDNGYRVILSN 468


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 265 LSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGN 378
           L G + QV+G+LG  G+      +  A + A     GN
Sbjct: 13  LIGVVYQVQGQLGLAGNNYIEKQLLCALDKAPCDALGN 50


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 444 SLLSNAQYSTQAINRNSHYSNSNSVIRIIEISHRASPSQ 560
           SL+ N  YS + I      SNS+  +  I      +PS+
Sbjct: 24  SLIINTFYSNKEIFLRELISNSSDALDKIRYESLTNPSR 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,318
Number of Sequences: 336
Number of extensions: 2893
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)