Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20826
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom...    27   2.7  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   4.8  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    26   4.8  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   4.8  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   6.3  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   6.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   6.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   6.3  

>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +3

Query: 423 VLDNAHSSLLSNAQYSTQAINRNSHYSNSNSVIRIIEISHRASPS 557
           +++ AH+ + ++ Q S+Q+ N+N   SN+ +     E+S + S S
Sbjct: 65  LVELAHARVNNDLQMSSQSANKNDDNSNNQNPSNNKEMSDKESDS 109


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 432 NAHSSLLSNAQYSTQAINRNSHYSNSNSVIRIIEIS 539
           N+ +S LSN  Y+   + R SH S++++ +   EIS
Sbjct: 490 NSDNSDLSNYPYNDYRVYRMSHCSSNSNKVLASEIS 525


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 21/77 (27%), Positives = 38/77 (49%)
 Frame = +3

Query: 18  ILSFISTLKCLDKSKP*DDYFCLPHYRHWLWPNLNFIKKKKTFTILEVRRTKVASLDFMV 197
           + + ++ L+C+        +F   H   +L+P LN + K K F  L  R T +  +  +V
Sbjct: 82  VCNALALLQCIASHPETRIHFLNAHITLFLYPFLNTLSKSKPFEYL--RLTSLGVIGALV 139

Query: 198 RKEETWGVIMNVLTTWI 248
            K ++  VI  +L+T I
Sbjct: 140 -KNDSPEVINFLLSTEI 155


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 251 VNPCCEHVHNYPPCFLFAHHKIQTCYLRPTNF*NSESLLFLYKV 120
           +NPC     N+     +   KI+   L  T+F ++E++ FLY +
Sbjct: 49  LNPC-----NFSKSLFWLRKKIKNSVLLKTSFDSNETIFFLYSL 87


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 177 ASLDFMVRKEETWGVIMNVLTTWIH 251
           A+L   +R+E TWG +  + TT IH
Sbjct: 23  ATLPLAIRRELTWGQVNILHTTDIH 47


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 374 PDP*KPAEFAAVYTLPVLVFDPSSPNSPSTCEI 276
           P P + ++F  V  LP+   + SSPN  S  EI
Sbjct: 285 PPPWRDSDFETVPKLPIFYPNSSSPNFFSLSEI 317


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +3

Query: 417 RNVLDNAHSSLLSNAQYSTQAINRNSHYSNSNSVIRIIEISHRASPSQSQ 566
           R++ D+ ++S L  + +      R+SH     ++++  E+ HR  PS S+
Sbjct: 757 RSIGDDINNSKLGYSFFKESIEIRSSHSVLLRTILKNSELCHRFFPSMSK 806


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +3

Query: 417 RNVLDNAHSSLLSNAQYSTQAINRNSHYSNSNSVIRIIEISHRASPSQSQ 566
           R++ D+ ++S L  + +      R+SH     ++++  E+ HR  PS S+
Sbjct: 757 RSIGDDINNSKLGYSFFKESIEIRSSHSVLLRTILKNSELCHRFFPSMSK 806


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,022
Number of Sequences: 5004
Number of extensions: 46177
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)