Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20826
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0417 - 3214320-3214435,3214606-3214702,3214766-3214768,321...    31   0.92 
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969...    28   6.5  
02_05_0780 - 31705605-31705754,31705858-31706191,31706306-317064...    27   8.6  

>11_01_0417 -
           3214320-3214435,3214606-3214702,3214766-3214768,
           3215054-3215196,3215309-3215348,3215713-3215765,
           3215889-3215962,3216081-3216163,3216287-3216355,
           3216456-3216800
          Length = 340

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 432 NAHSSLLSNAQYSTQAINRNSHYSN--SNSVIRIIEISHRASPSQSQH 569
           N  SS +S  +YS      N+  S   SN +  I    HRASP+ + H
Sbjct: 203 NQQSSQVSEFKYSPSPSRHNNSSSERVSNGIASIAATKHRASPAPAHH 250


>01_06_1678 -
           39095986-39096205,39096400-39096477,39096578-39096949,
           39097374-39097671,39097867-39098077,39098331-39099023
          Length = 623

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 308 SSPNSPSTCEIAPLKCL*QVNPCCEHVHNYPP 213
           S P S S    APL      +P  EH+H++PP
Sbjct: 54  SPPPSSSASTAAPLPAPPTPSPVPEHLHHHPP 85


>02_05_0780 -
           31705605-31705754,31705858-31706191,31706306-31706478,
           31706615-31706810,31707864-31708777
          Length = 588

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -3

Query: 356 AEFAAVYTLPVLVFDPSSPN--SPSTCEIAPLKCL*QVNPCCEHVHNYPPCFLFAHHKIQ 183
           AE  A+Y   ++V DP+ P   S     +A L  L +    C       P +  AHH++ 
Sbjct: 242 AEAVALYDQAIMV-DPTRPAYWSNKAAALAALGRLIEAVGDCREAVRIDPSYGRAHHRLG 300

Query: 182 TCYLR 168
             YLR
Sbjct: 301 GLYLR 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,676,913
Number of Sequences: 37544
Number of extensions: 294159
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)