Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20826
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21778| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 29   2.9  
SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              29   3.8  
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_20482| Best HMM Match : p450 (HMM E-Value=4.6e-28)                  29   3.8  
SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77)            28   5.0  
SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_21778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +3

Query: 408 FSRRNVLDNA---HSSLLSNAQYSTQAINRNSHYSNSNSVIRIIEISH 542
           FS   ++D+A   HSSL+   +YS  ++     YS+S SVI  +E SH
Sbjct: 16  FSHSCLIDDAAFSHSSLIDYVEYSHSSVIGYVEYSHS-SVINYVEYSH 62


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 250 TCQRHLSGAISQVEGELGEEGSKTRTGSV 336
           TC  H+ GA S    + G  G++TRT  V
Sbjct: 166 TCCEHVGGAYSDCSHQCGNSGTRTRTRRV 194


>SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 869

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
 Frame = -3

Query: 311 PSSPNSPSTC-EIAPLKCL 258
           P+SP+SPSTC E+ P+K L
Sbjct: 166 PTSPDSPSTCDEVLPMKFL 184


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 414 RRNVLDNAHSSLLSNAQYSTQAINR----NSHYSNSNSVIRII 530
           R+  L+N HS + SNAQY  Q +      N +  NS  V + +
Sbjct: 237 RKQQLENRHSLISSNAQYHPQGLETYPSINEYKKNSRMVFKAL 279


>SB_20482| Best HMM Match : p450 (HMM E-Value=4.6e-28)
          Length = 473

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -3

Query: 236 EHVHNYPPCFLFAHHKIQTCYLRPTNF*NSESLLF-LYKV----QVWPKP 102
           E +  YPP FL A    + C ++   F    S++  +Y +    ++WP+P
Sbjct: 414 ETLRMYPPAFLQAREVTEDCVIKDMRFRKGVSIIMDIYSLHHDPELWPEP 463


>SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77)
          Length = 872

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 328 GSVYTAANSAG-FYGSGNYDLSNLRGRNFQEG 420
           G  Y   N AG +Y  GNY   N  G N+ +G
Sbjct: 479 GGYYADGNYAGGYYAGGNYADGNYAGGNYADG 510



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 337 YTAANSAG-FYGSGNYDLSNLRGRNFQEG 420
           Y   N AG +Y SGNY   N  G N+ +G
Sbjct: 442 YADGNYAGGYYASGNYADGNYAGGNYADG 470



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 328 GSVYTAANSAG-FYGSGNYDLSNLRGRNFQEG 420
           G  Y   N AG +Y  GNY   N  G N+ +G
Sbjct: 594 GGNYADGNYAGGYYAGGNYADGNYAGGNYADG 625


>SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 420 NVLDNAHSSLLSNAQYSTQAINRNSHYSNS 509
           NV+D  H   L NAQ   Q I  N+   N+
Sbjct: 311 NVMDEQHLKTLQNAQPEVQLIKNNAETQNA 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,144,931
Number of Sequences: 59808
Number of extensions: 351009
Number of successful extensions: 781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)