Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20826
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   1.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   1.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   1.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   1.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.3  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   6.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   6.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   6.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   6.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   6.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.2  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 441 SSLLSNAQYSTQAINRNSHYSNSN 512
           SSL +N +YS      N++Y+N+N
Sbjct: 83  SSLSNNYKYSNYNNYNNNNYNNNN 106


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 441 SSLLSNAQYSTQAINRNSHYSNSN 512
           SSL +N +YS      N++Y+N+N
Sbjct: 83  SSLSNNYKYSNYNNYNNNNYNNNN 106


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 441 SSLLSNAQYSTQAINRNSHYSNSN 512
           SSL +N +YS      N++Y+N+N
Sbjct: 83  SSLSNNYKYSNYNNYNNNNYNNNN 106


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 441 SSLLSNAQYSTQAINRNSHYSNSN 512
           SSL +N +YS      N++Y+N+N
Sbjct: 83  SSLSNNYKYSNYNNYNNNNYNNNN 106


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 432 NAHSSLLSNAQYSTQAINRNSHYSNSNS 515
           N+++S ++    +T A N N++ +N+N+
Sbjct: 222 NSNNSTITAGNANTNASNNNNNNNNNNN 249


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -3

Query: 317 FDPSSPNSPSTCEIAPLKCL*QVNPCCEH--VHNYPP 213
           F PS PNSP +        L   +P  ++  V  YPP
Sbjct: 63  FSPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPP 99


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -3

Query: 317 FDPSSPNSPSTCEIAPLKCL*QVNPCCEH--VHNYPP 213
           F PS PNSP +        L   +P  ++  V  YPP
Sbjct: 63  FSPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPP 99


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 462 QYSTQAINRNSHYSNSNSVIRIIEISHRASPSQSQ 566
           +Y T  + +  HY+   +  R IEI+H    ++ Q
Sbjct: 17  RYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQ 51


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 519 LLNCYCYNENFYLSLAYYIARWI 451
           LLN   +N N Y  L YY   +I
Sbjct: 307 LLNNTIHNNNNYKKLQYYNINYI 329


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 519 LLNCYCYNENFYLSLAYYIARWI 451
           LLN   +N N Y  L YY   +I
Sbjct: 318 LLNNTIHNNNNYKKLQYYNINYI 340


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 519 LLNCYCYNENFYLSLAYYIARWI 451
           LLN   +N N Y  L YY   +I
Sbjct: 318 LLNNTIHNNNNYKKLQYYNINYI 340


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 519 LLNCYCYNENFYLSLAYYIARWI 451
           LLN   +N N Y  L YY   +I
Sbjct: 307 LLNNTIHNNNNYKKLQYYNINYI 329


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 462 QYSTQAINRNSHYSNSNSVIRIIEISHRASPSQSQ 566
           +Y T  + +  HY+   +  R IEI+H    ++ Q
Sbjct: 279 RYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQ 313


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 93  YRHWLWPNL 119
           +RHW +PNL
Sbjct: 862 WRHWKFPNL 870


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,864
Number of Sequences: 438
Number of extensions: 3636
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)