Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20826
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit, ...    29   2.4  
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi...    28   4.1  
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil...    27   9.5  

>At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit,
           putative similar to cellulose synthase-1 [gi:9622874]
           and -2 [gi:9622876] from Zea mays
          Length = 1065

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 235 SQHGFTCQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGF 363
           S  G    + L+G I Q+    G++   T+TG+V+ A N  GF
Sbjct: 18  SDDGLKPLKDLNGQICQI---CGDDVGLTKTGNVFVACNECGF 57


>At1g01440.1 68414.m00059 extra-large G-protein-related weak
           similarity to extra-large G-protein  (AtXLG1)
           (GI:3201682) [Arabidopsis thaliana]
          Length = 664

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 406 YVPLGY*DHNFPIHKSPQNLQQ-CTRYPFWFLIPPRP 299
           +VP     + FP+H+ PQN  Q  + YP    +PPRP
Sbjct: 148 HVPAYRDPYGFPVHRIPQNFYQGPSHYP--NQMPPRP 182


>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
           protein / CHD family protein similar to SP|O14647
           Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
           {Homo sapiens}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00385: 'chromo' (CHRromatin
           Organization MOdifier)
          Length = 1722

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 426 LDNAHSSLLSNAQYSTQAINRNSHYSNSN 512
           L  A S++ SN++ S +AI++N HYS+SN
Sbjct: 205 LPKAGSAVHSNSRTS-RAIHKNIHYSDSN 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,975,679
Number of Sequences: 28952
Number of extensions: 241820
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)