Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20823
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   4.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.8  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   8.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   8.4  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 37  CVNSSHFSVSGG 2
           CV+  H SVSGG
Sbjct: 301 CVSGEHLSVSGG 312


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 96  SNYNTGFTMFNNY 58
           +NYN  +  +NNY
Sbjct: 328 NNYNNNYNNYNNY 340


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 300 LVTXN*LEWRCLCREPQSRKNSPSRGL 380
           L T + L+ + LC  P+SR   PS  L
Sbjct: 109 LKTADQLKIKGLCEVPESRDGPPSVSL 135


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 93  NYNTGFTMFNNYFPSN 46
           NYN  +  +NN + +N
Sbjct: 93  NYNNNYNNYNNNYNTN 108


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 421 YNSKFYYSVYN 453
           YN K YY++ N
Sbjct: 108 YNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 421 YNSKFYYSVYN 453
           YN K YY++ N
Sbjct: 108 YNKKLYYNIIN 118


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 421 YNSKFYYSVYN 453
           YN K YY++ N
Sbjct: 328 YNKKLYYNIIN 338


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 421 YNSKFYYSVYN 453
           YN K YY++ N
Sbjct: 332 YNKKLYYNIIN 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,060
Number of Sequences: 438
Number of extensions: 2004
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)