Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20821
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   4.3  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   4.3  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   7.5  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   7.5  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   7.5  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   7.5  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   9.9  

>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -3

Query: 150 SVAKSR--LCCPAWNDAWN*CFFCQCSELNCLYILHVRIDCQYSFFEQL 10
           S+ KSR  L C      W  C   QCS+ NC    H+    +  FF ++
Sbjct: 297 SIPKSRWKLVCCICKLRWGTCV--QCSDKNCYAAYHITCARRAGFFYKI 343


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 27   SIGNLSERGEYISNSTQSTDRKSISSMHRSTRDNIGVISQHSESDS 164
            S  N+SERG+Y  N+ +  +  SI  +   +++N   +S+   S+S
Sbjct: 1022 SDSNVSERGDYDDNAKKVDEVISIEKVDGYSKENNVPLSEDDLSNS 1067


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +3

Query: 93  SISSMHRSTRDNIGVISQHSESDSHRHQIKRDGQSTMTVDRQPKAVVRDNLRIGESFMVS 272
           S+SS  RS R   G  S HSES+ +  +     +    + R+ +     +LR+  S M +
Sbjct: 358 SVSSEERS-RSRAGSFSHHSESE-NEDEDSEAFRRRQELRRERRRQAEKDLRL--SRMGA 413

Query: 273 QKRVTVASLD 302
           +KR  +A  D
Sbjct: 414 EKRAKLAEKD 423


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 63  SNSTQSTDRKSISSMHRSTRDNIGVISQHSESDSHRHQIKRDGQSTMTVDRQPKAVV 233
           S+S  S+ R    S+    R +  +I QH E +    +++ +    +    QPK +V
Sbjct: 298 SSSASSSSRTQAKSIPSHERTHYRLIRQHPELEHVWEKLEEEAPREVKQIEQPKELV 354


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 264 MVSQKRVTVASLDLNKHKELIGQNASSE*KESLVMAITHRILYWV 398
           +V   R TV S  L KH++L    A+   K+ +   +T   + WV
Sbjct: 95  IVIDSRNTVLSYPLMKHRDLSKPAATYFLKQKVTCTVTDPTIDWV 139


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +3

Query: 45  ERGEYISNSTQSTDRKSISSMHRSTRDNIGVISQHSESDSHRHQIKRDGQSTMTVDRQPK 224
           E GE    S+Q +   SIS+  RSTR      +   ++D       +  ++     R+ K
Sbjct: 265 ESGEASPQSSQQSTITSISTTTRSTRKAKREAAAEDKADLPAAVAPKPSKTRKVGGRRGK 324

Query: 225 AVVRDNLRI 251
           +   DN RI
Sbjct: 325 SSSNDNHRI 333


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +3

Query: 123 DNIGVISQHSESDSHRHQIKRDGQSTMTVDRQPKAVVR 236
           D + V+S+H++ + +  +    G  T+T+D     ++R
Sbjct: 133 DKVQVVSKHNDDEQYIWESSAGGSFTVTLDTDGPRLLR 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,207
Number of Sequences: 5004
Number of extensions: 44868
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)