Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20821
(554 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375... 31 0.62
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148... 31 0.82
02_04_0530 + 23702714-23703787 30 1.1
03_02_0928 + 12464325-12464498,12466494-12466679,12466929-124670... 30 1.4
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 29 1.9
07_01_1083 - 9862334-9862570,9862602-9863185,9863491-9863596 29 2.5
11_08_0068 + 28143712-28143853,28145496-28146525,28146654-28146750 28 4.4
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559... 28 4.4
12_02_0724 + 22541409-22541605,22542850-22542922,22543019-225430... 28 5.8
08_02_1084 - 24232968-24234779 27 7.6
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 27 7.6
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 27 7.6
>01_07_0288 +
42534552-42534558,42535302-42537280,42537367-42537513,
42537982-42538526,42538906-42538981,42539357-42539437
Length = 944
Score = 31.1 bits (67), Expect = 0.62
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 66 NSTQSTDRKSISSMHRSTRDNIGVISQHSESDSHRHQI 179
N+ +S ISS H+S +G IS+HSE +H H++
Sbjct: 770 NTGRSLHANGISSQHKS----LGSISEHSEVSTHSHRV 803
>03_06_0449 -
34013973-34014056,34014595-34014630,34014729-34014816,
34015034-34015143,34015611-34015715,34015812-34015903,
34016145-34016232,34016407-34016526,34016603-34016721,
34017253-34018126
Length = 571
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 21 RKSIGNLSERGEYISNSTQSTDRKSISSMHRSTR--DNIGVISQHSESDSHRHQIKRDGQ 194
+++ GN +R + + QS +K+ S R R D+ HS++ + ++ R+G
Sbjct: 60 KEARGNAGQRRRWSDTNGQSDAKKNASQAVRRKRKGDHDSWNGDHSDTPYSKSKLTRNGP 119
Query: 195 STMT 206
STMT
Sbjct: 120 STMT 123
>02_04_0530 + 23702714-23703787
Length = 357
Score = 30.3 bits (65), Expect = 1.1
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Frame = +3
Query: 24 KSIGNLSER--GEYISNSTQSTDRKSISSMHRSTRDNIGV---ISQHSESDSHRHQIKRD 188
KS GN S G N++ S+ + SS S D GV S + + +H + +
Sbjct: 229 KSPGNPSSTTTGSSSGNASGSSSTSASSSGSDSDSDGGGVGDTASSNPNTANHLPVVVVE 288
Query: 189 GQSTMTVDRQPKAVVRDNLRIGESFMVSQKRVTVASLDLNKHKELIGQ 332
+T ++ QP V ++GE S++ A + ELI +
Sbjct: 289 AVATKPLEPQPPQVAEQAYKMGEKLTRSRREAAPAPAPAGRMSELIAR 336
>03_02_0928 + 12464325-12464498,12466494-12466679,12466929-12467021,
12467212-12467394,12467506-12467608,12467695-12467865,
12468086-12469084,12469178-12469254,12469485-12470337,
12470878-12471000,12471526-12471878
Length = 1104
Score = 29.9 bits (64), Expect = 1.4
Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 1/150 (0%)
Frame = +3
Query: 66 NSTQSTDRKSISSMHRSTRDNIGVISQHSESDSHRHQIKRDG-QSTMTVDRQPKAVVRDN 242
+S+ ST+ S S S DN + S+ S+ H+ + Q M Q K ++
Sbjct: 618 SSSHSTEDSSQQSHDESNWDNSVQLYDSSDDISNMHETDQHILQKHMVSLGQNKTLINRQ 677
Query: 243 LRIGESFMVSQKRVTVASLDLNKHKELIGQNASSE*KESLVMAITHRILYWVTVTQVIRK 422
+R+ + Q V + K +++ A+ + K S + + +++ + I
Sbjct: 678 VRVKSN----QASVPKGKFSICK-EQITQDTATKDIKLSRHLRVKDSEHEYISTAKKISS 732
Query: 423 NTQHMCTVCVQLP*SSLHAPPYKHTRDSRN 512
C CV+ ++ YKH R S+N
Sbjct: 733 YNCDTCLECVKPESEAMIPRHYKHARSSKN 762
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +3
Query: 3 TAAAAQRKSIG---NLSERGEYISNSTQSTDRKSISSM--HRSTRDNIGVISQHSESDSH 167
TA+ A++ G N + + ++ + S RK + M S +DN + S+ D
Sbjct: 39 TASEAKKTKEGLEENSNGKSNHLESGRGSKSRKDVREMPLEGSKKDNSDKPGEGSKKDEM 98
Query: 168 RHQIKRDGQSTMTVDRQPKAVVRDNLR 248
RH + + + D Q + +DNL+
Sbjct: 99 RHTPREERRKDNMRDMQREVSKKDNLK 125
>07_01_1083 - 9862334-9862570,9862602-9863185,9863491-9863596
Length = 308
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 24 KSIGNLSERGEYISNSTQSTDRKSISSMHRSTRDNIGVISQHSESDSHRHQI 179
+ + +L+ G+ + + +RKS SS+ RS G +SQH ++ ++H +
Sbjct: 227 RDVKHLNFFGQLALDIVNTAERKSSSSIGRSKTGMDGNVSQHMDAMLYQHNL 278
>11_08_0068 + 28143712-28143853,28145496-28146525,28146654-28146750
Length = 422
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 511 FRESRVCLYGGAWRLDQGSWTHTVHMCCVFF-LITCV 404
F+++ L+G WR D+ +H+CC+ +I C+
Sbjct: 311 FKDTWKFLHGEMWRPDKHRLPRIIHVCCMLHNIIICL 347
>06_03_0813 -
24853119-24854480,24854711-24855442,24855556-24855962,
24856091-24856359,24856681-24856733,24857019-24857078,
24857309-24857363,24858080-24858155,24858225-24858801
Length = 1196
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -3
Query: 105 WN*CFFCQCSELN-CLYILHVRIDCQYSF 22
W CF C L CL I + I C+YSF
Sbjct: 247 WFACFVCNTMVLKQCLQIWGILISCRYSF 275
>12_02_0724 +
22541409-22541605,22542850-22542922,22543019-22543081,
22543598-22543654,22543909-22544001
Length = 160
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +3
Query: 63 SNSTQSTDRKSISSMHRSTRDNIGVISQHSESDSHRHQIKRDGQSTMTVDRQPKAVVRDN 242
S+S+ +DR+ + HRS + S S + + + R S+ + + K+
Sbjct: 25 SSSSSGSDRRRRRARHRSGHRKDAAAAAASSSSALKARKDRSSSSSYDSEHEGKSCKHKK 84
Query: 243 LRIG-ESFMVSQKRVTVASLDLNKHKELIGQN 335
R +S + + + D +KHKE +G++
Sbjct: 85 SRSSRKSRERERSKDRHSKRDKSKHKEFLGRD 116
>08_02_1084 - 24232968-24234779
Length = 603
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 84 DRKSISSMHRSTRDNIGVISQHSESDSHRHQIKRDGQST 200
DR+ HR RD G +H + DS R++ G+S+
Sbjct: 545 DRERERDRHRDDRDRYGDYHRHRDRDSERNEDWDRGRSS 583
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 27.5 bits (58), Expect = 7.6
Identities = 24/104 (23%), Positives = 38/104 (36%)
Frame = +3
Query: 36 NLSERGEYISNSTQSTDRKSISSMHRSTRDNIGVISQHSESDSHRHQIKRDGQSTMTVDR 215
+L+ + S S + + SIS R+ D ++S E H +I QST R
Sbjct: 481 SLNRHNKEASASYRYNAQCSISGTTRAMADEHVLVSNAQEQSPHIQEITMQDQSTSLNGR 540
Query: 216 QPKAVVRDNLRIGESFMVSQKRVTVASLDLNKHKELIGQNASSE 347
+A + R +S T A D +G N +
Sbjct: 541 NKEASASTSYRYNAQCSIS--GTTRAMADERVDPSFVGNNVHEQ 582
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 27 SIGNL--SERGEYISNSTQSTDRKSISSMHRSTRDNIGVISQHSES-DSH 167
S+ NL S R ++I + STD + S R ++ IG +S H+ S +SH
Sbjct: 481 SVTNLENSSRSDFIFAA--STDHSKLHSQRRPSKKKIGGMSNHANSVESH 528
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,117
Number of Sequences: 37544
Number of extensions: 306435
Number of successful extensions: 848
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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