Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20821
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical...    29   3.0  
Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +3

Query: 12  AAQRKSIGNLSERGEYISNSTQSTDRKSISSMHRSTRDNI-GVISQHSESDSHRHQIKRD 188
           AA   S  + S      S+S++S D K  +  H    ++  G   +H E + H H    D
Sbjct: 338 AASSSSSSSSSSSSSSSSSSSESEDEKKHAPAHHEHHEHKDGAHHEHKEGEHHEHAAHHD 397


>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
            protein Y69A2AR.31 protein.
          Length = 1219

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 51   GEYISNSTQST--DRKSISSMHRSTRDNIGVISQHSESDSHRHQIKRDGQSTMTVDRQPK 224
            G +    TQ+T  DRKSI+S    T DN+    +++E       +    +S+ TV R+PK
Sbjct: 855  GIFGKKETQTTVADRKSINS---ETIDNLPTDDENNEEQMDEEPMTEIKKSSDTVQRKPK 911


>Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.5 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 7   RQLLKERVLAIYPNVENI*AIQLRALTEKASV 102
           + +L++R + I+PN ENI  +++  + E + V
Sbjct: 176 KSVLEKRSILIFPNEENIFPVEMNTMFENSDV 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,803,825
Number of Sequences: 27780
Number of extensions: 264944
Number of successful extensions: 824
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)