Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20821
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45570.1 68418.m05596 Ulp1 protease family protein contains P...    32   0.22 
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    29   2.1  
At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger) fa...    28   3.6  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    28   3.6  
At1g21680.1 68414.m02713 expressed protein similar to TolB prote...    28   3.6  
At3g51460.1 68416.m05636 phosphoinositide phosphatase family pro...    28   4.8  
At1g18370.1 68414.m02295 kinesin motor family protein (NACK1) si...    28   4.8  
At2g40620.1 68415.m05010 bZIP transcription factor family protei...    27   6.4  
At1g19650.1 68414.m02449 SEC14 cytosolic factor, putative / phos...    27   6.4  

>At5g45570.1 68418.m05596 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At4g08430, At5g28235
          Length = 921

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = +3

Query: 87  RKSISSMHRSTRDNIGVISQHSESDSHRHQIKRDGQSTMTVDRQPKAVVRDNLRIGESFM 266
           RK   +   S  D    + + + +D   H+ +R G++ + VD + K  + D        M
Sbjct: 339 RKRKQNQESSNEDGESKVIESTPADDVSHKKQRTGKAHIKVDEEEKTSLLDIWN-----M 393

Query: 267 VSQKRVTVASLDLNKHKELIG 329
           + +  VT++ +D N    L+G
Sbjct: 394 LEKMNVTISDMDKNASSRLVG 414


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
            RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF00397:
            WW domain
          Length = 1088

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 251  RREFYGQSEARYGSFSRSEQTQRT-DRSXXXXXXXXXARHGHNTS 382
            R   Y +S +R GS+SRS    R+  RS          R GHN S
Sbjct: 967  RSSSYSRSRSRSGSYSRSRSRSRSWSRSRSRSPRHSRDRGGHNRS 1011


>At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 226

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
 Frame = +3

Query: 42  SERGEYISNSTQSTDR--KSISSMHRSTRDNIGVISQHSESDSH------------RHQI 179
           S + E IS ST  TDR         ++T++ I + +   ESDS+            RH+ 
Sbjct: 4   SYKHELISTSTNETDRVINRCFLRKKTTKEVIHLKASQVESDSYSFIVTYQPNLRIRHEN 63

Query: 180 KRDGQSTMTVDRQPKAVVRDNLRIGESFMVSQK 278
               Q   T++R P  V +    I + F+VSQ+
Sbjct: 64  LDGHQLKTTLERHPDRVFKLEDNIPKQFLVSQE 96


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 147 VAKSRLC--CPAWNDAWN*CFFCQCSELNCLYILHVR 43
           V +S++C  CP+   A   CFF +C E +C + LHV+
Sbjct: 489 VHRSQVCSACPSLLRA---CFFYKCDEQDCDFQLHVQ 522


>At1g21680.1 68414.m02713 expressed protein similar to TolB protein
           precursor (SP:Q9ZDM5) {Rickettsia prowazekii}; ESTs
           gb|N96028, gb|F14286, gb|T20680, gb|F14443, gb|AA657300
           and gb|N65244 come from this gene
          Length = 706

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 484 GGAWRLDQGSWTHTV 440
           GG WRL +G+WT T+
Sbjct: 540 GGLWRLTEGAWTDTM 554


>At3g51460.1 68416.m05636 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; contains non-consensus AT-AC
           splice sites at intron 8
          Length = 597

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 362 RHGHNTSHFVLGDGNTSYKKEY 427
           R+GH T+H VL DG +S ++ Y
Sbjct: 468 RYGHRTAHGVLKDGWSSLRRYY 489


>At1g18370.1 68414.m02295 kinesin motor family protein (NACK1)
           similar to kinesin heavy chain isolog GB:AAB63609
           GI:2262101 from [Arabidopsis thaliana]
          Length = 974

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 3   TAAAAQRKSIGNLSERGEYISNSTQSTD--RKSISSMHRSTRDNIGVISQHSESDSHRHQ 176
           + +A  ++ I  L  +G  I+N  +  +  +KSI  +  S   NI    +  ++ +H HQ
Sbjct: 563 SVSANLKEEITRLHSQGSTIANLEEQLESVQKSIDKLVMSLPSNISAGDETPKTKNHHHQ 622

Query: 177 IKR 185
            K+
Sbjct: 623 SKK 625


>At2g40620.1 68415.m05010 bZIP transcription factor family protein
           identical to b-Zip DNA binding protein GI:2246376 from
           [Arabidopsis thaliana]; contains a bZIP transcription
           factor basic domain signature (PDOC00036)
          Length = 367

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 165 HRHQIKRDGQSTMTVDRQPKAVVRDNLRIGESFMVSQKR 281
           HRH +  DG ST+      KA+  D  ++ E ++V  KR
Sbjct: 115 HRHSLSVDGSSTLESIEAKKAMAPD--KLAELWVVDPKR 151


>At1g19650.1 68414.m02449 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative similar to
           SP:P24859 from [Kluyveromyces lactissimilar to
           phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
           CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
           N-terminus
          Length = 608

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +3

Query: 63  SNSTQSTDRKS---ISSMHRSTRDNIGVISQHSESDSHRHQIKRDGQSTMTVDRQPKAVV 233
           SN+ +  ++KS   +S   + TR   G++ + S     RH +KR G  + ++DR      
Sbjct: 14  SNNGEKREKKSDFEVSEDEKKTRIG-GILKKKSSKSKFRHSLKRRG--SRSIDRTLSLTF 70

Query: 234 RDNLRIGESFMVSQKRVTVAS 296
            D     E   VS+ R ++ S
Sbjct: 71  EDIHDAEELRYVSEFRQSLIS 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,922,083
Number of Sequences: 28952
Number of extensions: 240343
Number of successful extensions: 651
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)