Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20819
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.7  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   6.5  
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    26   6.5  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    26   6.5  

>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 139 YWFYYTRVCCDPQRAPQKKE*IIPFPEAP 225
           Y++YY  +C  P   P K+  I PF E P
Sbjct: 68  YYYYYLLICLSPHFFPIKR--IRPFHENP 94


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 585 GSGCLRFRLVLRPLTTGDTAHPCPRHE 505
           GSG +  R  L+PL+  D   P P+ E
Sbjct: 5   GSGSITNRSTLKPLSVDDLRSPSPQKE 31


>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +3

Query: 432 ERRPPHCIQLGEWSAEGPTKKARAPHVWDTGGLCHQL*EAVG 557
           ++ P   +  G W A+   ++A     W+ GGL   +  ++G
Sbjct: 64  KKHPSWVVPKGGWEADESVQQAALREGWEEGGLVGHITRSLG 105


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 677 LEQYPSAEVVILGDFNAHHQEWLGSRTTDLPGRAAYDFALSYGL 546
           +E    +     G +  HH   LG +  D    AAY FA+S  L
Sbjct: 362 IEALDGSGTAYTGGWITHHYIQLGYQLADTVSCAAYSFAVSCAL 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,455,528
Number of Sequences: 5004
Number of extensions: 79222
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)