Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20819
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0104 + 13434954-13435145,13436220-13436288,13436386-134365... 31 0.97
07_03_0484 + 18619293-18619471,18620389-18620440 29 2.9
04_01_0229 - 2897484-2900402 29 2.9
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 29 3.9
03_03_0188 + 15269347-15270213 29 3.9
06_03_0969 - 26413534-26413594,26415020-26415318 29 5.2
08_01_0452 - 3999072-3999344 28 6.8
07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049 28 6.8
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 28 6.8
10_01_0324 + 3566638-3566859,3566959-3567223,3567881-3568161 28 9.0
06_02_0265 - 13586552-13587985 28 9.0
03_03_0251 - 15849211-15851457 28 9.0
02_05_0589 - 30176354-30176829,30176895-30177075 28 9.0
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 9.0
>07_03_0104 +
13434954-13435145,13436220-13436288,13436386-13436523,
13436612-13436729,13437214-13437296,13438305-13438400,
13438552-13438720,13438798-13438940,13439027-13439113,
13439197-13439382,13439956-13440123,13441028-13441148,
13441453-13441522,13441694-13441781,13441866-13442018
Length = 626
Score = 31.1 bits (67), Expect = 0.97
Identities = 21/76 (27%), Positives = 28/76 (36%)
Frame = -2
Query: 447 VVVDAPLGSSDHCLIRAAIPLSRPSRRTTTGFRRVWRYRSADWDGMREFYASHPWGRLCL 268
V++ P G+S + A+ PL R +R T W + G Y SHPW L
Sbjct: 61 VLIKLPAGTSFYGTGEASGPLERTGKRVFTWNTDAWGF----GPGTTSLYQSHPWVLAVL 116
Query: 267 SSDDLTSVRTDLKTWC 220
V D C
Sbjct: 117 PDGKALGVLADTTQRC 132
>07_03_0484 + 18619293-18619471,18620389-18620440
Length = 76
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -3
Query: 644 LGDFNAHHQEWLGSRTTDLPGRAAYDFALSYGLSQLVTQPTRVPDMRSTSLLCWTFC*PL 465
+G A Q+ LP + FA G S VT PTR+P S L+ + FC P+
Sbjct: 10 VGSEGARQQQGDKVDMASLPSSSKSSFA-RLGSSASVT-PTRLPTRSSAMLIRYCFCDPV 67
Query: 464 T 462
T
Sbjct: 68 T 68
>04_01_0229 - 2897484-2900402
Length = 972
Score = 29.5 bits (63), Expect = 2.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 644 LGDFNAHHQEWLGSRTTDLPGRAA 573
LGD ++HH +W+G+ DL +++
Sbjct: 488 LGDHSSHHVKWIGTSNKDLTNKSS 511
>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 385 EWYGSTDKAVIRRSKWS 435
E +GS +KAVIR SKWS
Sbjct: 1849 ERFGSREKAVIRESKWS 1865
>03_03_0188 + 15269347-15270213
Length = 288
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 208 PFPEAPRL*VGPHRRQIIGGKAEPPPWV---GCVKFTHSIPVC*PVPP 342
PF AP V P +GG + PP++ +K+THS P P PP
Sbjct: 125 PFAAAPPPAVRPRLLGGVGGGHQLPPFLLRPSPLKYTHSHPTPPPPPP 172
>06_03_0969 - 26413534-26413594,26415020-26415318
Length = 119
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +3
Query: 435 RRPPHCIQLGEWSAEGPTKKARAPHVWDTGGLCH 536
RRPP + A GP +AR P G CH
Sbjct: 71 RRPPAAARRPPAMARGPQAQARRPPAMAQGSFCH 104
>08_01_0452 - 3999072-3999344
Length = 90
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 575 QPDPGGQWFWTPTTPG 622
QP+ GG W W P T G
Sbjct: 39 QPNVGGNWIWCPPTSG 54
>07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049
Length = 444
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 93 LLGDALVPNSCSPGDPLVLERPPP 22
L G L P SC+PG P L P P
Sbjct: 34 LQGRRLTPPSCTPGTPAALPSPGP 57
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 87 GDALVPNSCSPGDP-LVLERPPPRXG 13
G LVP + SPG P L +PPPR G
Sbjct: 154 GGRLVPVAASPGSPGRRLAQPPPRPG 179
>10_01_0324 + 3566638-3566859,3566959-3567223,3567881-3568161
Length = 255
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -2
Query: 426 GSSDHCLIRAAIPLSRPSRRTTTGFRRVWRYRSADWDGMREFYASHPWGRLCLSSDDLTS 247
G++ C + A+P RP+RR+T + R +W YA++ L + DD+
Sbjct: 192 GTNVGCKVSTAVP--RPTRRSTREGPSLRRCLDDEWAAYAADYAAYTDDDLTNADDDIGC 249
Query: 246 VRTD 235
+D
Sbjct: 250 YESD 253
>06_02_0265 - 13586552-13587985
Length = 477
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 628 ALKSPRITTSADGYCSSTRQSPLVHC 705
AL+ P + DG C S R +P V+C
Sbjct: 218 ALEGPGVAALRDGRCLSNRATPPVYC 243
>03_03_0251 - 15849211-15851457
Length = 748
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 588 PGSGCLRFRLVLRPLTTGDTAHPCPRHEEHEPSLLDLLLTTHPAGY 451
PG + + + +G+ + P+HEE + LLDLL GY
Sbjct: 612 PGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGY 657
>02_05_0589 - 30176354-30176829,30176895-30177075
Length = 218
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 602 WTPTTPGDER*SHQGSPPPQMGTAQA 679
+TPT+P R S + SP P G AQA
Sbjct: 163 FTPTSPSASRPSARTSPSPSPGPAQA 188
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -2
Query: 192 LLRCPLGVAANPGIIKPVGMLHASSGPHTWHLMLLGDA 79
+LRC G+AA P + + +SS HTW L L GDA
Sbjct: 612 VLRCRSGMAA-PAMARRSSSC-SSSKEHTWMLFLGGDA 647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,581,007
Number of Sequences: 37544
Number of extensions: 721105
Number of successful extensions: 1842
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1842
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -