Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20819
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75526-4|CAA99770.1|  360|Caenorhabditis elegans Hypothetical pr...    36   0.040
EF409995-1|ABN58742.1|  410|Caenorhabditis elegans reduced folat...    36   0.040

>Z75526-4|CAA99770.1|  360|Caenorhabditis elegans Hypothetical
           protein C06H2.4 protein.
          Length = 360

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 19/79 (24%), Positives = 38/79 (48%)
 Frame = -2

Query: 321 WDGMREFYASHPWGRLCLSSDDLTSVRTDLKTWCFREWNYSFLLLRCPLGVAANPGIIKP 142
           +  ++EF  + P+    L+S +      +L +  +  W YS++L   P+ +  +    KP
Sbjct: 13  YGAVKEFRPATPFLTPFLASPEKNITLDELYSQVYPYWTYSYMLALIPMFILTDILRYKP 72

Query: 141 VGMLHASSGPHTWHLMLLG 85
           + M+ A     TW L++ G
Sbjct: 73  IVMIEAIGLVATWALLVFG 91


>EF409995-1|ABN58742.1|  410|Caenorhabditis elegans reduced folate
           carrier protein.
          Length = 410

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 19/79 (24%), Positives = 38/79 (48%)
 Frame = -2

Query: 321 WDGMREFYASHPWGRLCLSSDDLTSVRTDLKTWCFREWNYSFLLLRCPLGVAANPGIIKP 142
           +  ++EF  + P+    L+S +      +L +  +  W YS++L   P+ +  +    KP
Sbjct: 13  YGAVKEFRPATPFLTPFLASPEKNITLDELYSQVYPYWTYSYMLALIPMFILTDILRYKP 72

Query: 141 VGMLHASSGPHTWHLMLLG 85
           + M+ A     TW L++ G
Sbjct: 73  IVMIEAIGLVATWALLVFG 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,147,376
Number of Sequences: 27780
Number of extensions: 506533
Number of successful extensions: 1285
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)