Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20818
         (710 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000049A2C9 Cluster: hypothetical protein 128.t00005;...    35   1.7  
UniRef50_UPI0000498519 Cluster: hypothetical protein 62.t00011; ...    33   6.9  

>UniRef50_UPI000049A2C9 Cluster: hypothetical protein 128.t00005;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 128.t00005 - Entamoeba histolytica HM-1:IMSS
          Length = 680

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = +1

Query: 406 ITIIASYSKIQILNNSVDDTNRNFM---SFSKCQSFISLTKC---NFHYCSQV 546
           IT  +S  KIQ +NN++  T  NF    SFS C  + +L KC    F Y S +
Sbjct: 451 ITDSSSIEKIQEMNNNIMSTTNNFKLIPSFSSCGIYFNLIKCIENEFEYVSNL 503


>UniRef50_UPI0000498519 Cluster: hypothetical protein 62.t00011;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 62.t00011 - Entamoeba histolytica HM-1:IMSS
          Length = 559

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 427 SKIQILNNSVDDTNRNFMSFSKCQSFISL---TKCNF 528
           SKI I++  + +TN+  M FS+C S +SL   T+C F
Sbjct: 256 SKINIIDGDLTNTNQFVMDFSQCSSVVSLHSTTECYF 292


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,744,723
Number of Sequences: 1657284
Number of extensions: 11178945
Number of successful extensions: 22834
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22825
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)