Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20818
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   3.5  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    26   4.6  

>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 424 YSKIQILNNSVDDTNRNFMSFSKCQSFISLTKCNFHY 534
           Y  +++    VD T R F+S     +FISL  C F Y
Sbjct: 91  YDSLKLTFAHVDPTLRYFISGLGTGTFISLFACPFEY 127


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 300 KKIPSYFVKFTSQFLITVCSITQVNSKKISLE 395
           + IP     +TS  L +VC   Q+N K IS E
Sbjct: 110 RSIPKCIGMYTSPHLRSVCERIQLNGKPISQE 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,838
Number of Sequences: 5004
Number of extensions: 53579
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)