Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20818
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19354| Best HMM Match : MPPN (HMM E-Value=2.9)                      36   0.043
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)               28   8.6  

>SB_19354| Best HMM Match : MPPN (HMM E-Value=2.9)
          Length = 290

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -2

Query: 649 MFHFR*STIVLYFPKNNALF*NCFFTLSNRSAVLRPDYNNENYILLAR 506
           +FHF  + I+ YF KNNAL  NC + L   ++     Y  ++Y+LL +
Sbjct: 88  IFHFLKTFIIKYFLKNNALI-NCCYKLYIFNSFQAIQYQEQSYLLLVK 134


>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
          Length = 527

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +1

Query: 394 NFVCITIIASYSKI-QILNNSVDDTNRNFMSFSKCQSFISLTKCNFHYCSQVLTPLTCSI 570
           N + +T   +++ + + LN+    T  N ++ + C   I +T C++H     +T  TC  
Sbjct: 420 NHITVTTCHNHTTVTKCLNHITVTTCHNHITVTTCHDHIPVTTCHYH-----ITVTTC-- 472

Query: 571 K*RNNFKTVHCSSE-SITQWLT-IESETCHWYXPL 669
              N+     C +  ++T     I   TCH + P+
Sbjct: 473 --HNHITVTKCLNHITVTTCHNHITVTTCHDHIPV 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,550,490
Number of Sequences: 59808
Number of extensions: 341241
Number of successful extensions: 639
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)