Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20818
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    31   0.81 
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    26   6.6  
DQ178635-1|ABD75714.1|  361|Caenorhabditis elegans tetraspanin f...    26   6.7  
U49947-7|AAA93425.2|  382|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +1

Query: 448 NSVDDTNRNFMSFSKCQSFISLTKCN----FHYCSQVLTPLTCSIK*RNNF-KTVHCSSE 612
           N  D    NF S ++C +F   + CN     +       P++C+ + +NN  K+  C  +
Sbjct: 691 NGCDGNPNNFASLNQCNNFCMASACNAGDVVYLNPNTALPISCNDELQNNCPKSFQCIYD 750

Query: 613 SIT 621
           S+T
Sbjct: 751 SLT 753


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 25.8 bits (54), Expect(2) = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 472 NFMSFSKCQSFISLTKCNFHYCSQVLTPL 558
           NF S+ K   FI +    FH CS +LT +
Sbjct: 247 NFPSY-KLNDFIMILVLGFHICSLILTQI 274



 Score = 20.6 bits (41), Expect(2) = 6.6
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 403 CITIIASYSKIQILNNSVDDTNRNFMSFSK 492
           C   ++   K+++LN+  D  N     F+K
Sbjct: 203 CCKTVSCSQKVELLNDGWDQANITNKWFNK 232


>DQ178635-1|ABD75714.1|  361|Caenorhabditis elegans tetraspanin
           family protein protein.
          Length = 361

 Score = 25.8 bits (54), Expect(2) = 6.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 472 NFMSFSKCQSFISLTKCNFHYCSQVLTPL 558
           NF S+ K   FI +    FH CS +LT +
Sbjct: 135 NFPSY-KLNDFIMILVLGFHICSLILTQI 162



 Score = 20.6 bits (41), Expect(2) = 6.7
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 403 CITIIASYSKIQILNNSVDDTNRNFMSFSK 492
           C   ++   K+++LN+  D  N     F+K
Sbjct: 91  CCKTVSCSQKVELLNDGWDQANITNKWFNK 120


>U49947-7|AAA93425.2|  382|Caenorhabditis elegans Hypothetical
           protein C30G4.6 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 177 RDVYILSYTYITELCLIFIHMSKCFLGFSLCS*FNVLFCRIKKIPSYF 320
           RD   L+     +LC+   ++   F G SL S  N+  C  +K P Y+
Sbjct: 62  RDGLYLTVRDNPKLCMTTQNLDNLFYGLSLDSDLNINICFNEKTPDYW 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,505,580
Number of Sequences: 27780
Number of extensions: 288848
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)