Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20815
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.53 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.9  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   8.6  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 242 NARYLKYRCLSYPCHENPACRLRD 171
           N  +  Y C S PC     CR+ D
Sbjct: 372 NCEFSGYDCDSNPCQNGGVCRISD 395


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 303 FFL*IHFFYIMFKILFR*NKFVFVIHKILCKF 398
           F L I++FY  F I      F+  I+   C F
Sbjct: 142 FLLCIYYFYCAFIIFTVHLLFLLCIYHFFCAF 173


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 150 DFQMYFFISESAGRVFVARIR*AAIFQIPCVQEP 251
           D+ +Y  +   + R+    IR AAI+ + C Q P
Sbjct: 546 DYDIYTRLVSFSDRLKSRGIRTAAIWPLWCSQNP 579


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 355 KINLSL*YIKYCVNFKITKSN 417
           K+ L +  IKY VN  I +SN
Sbjct: 290 KVQLKIGEIKYSVNKLIFRSN 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,636
Number of Sequences: 336
Number of extensions: 2892
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)