Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20815
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   4.0  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.0  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   6.9  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   9.1  

>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -3

Query: 575 LVIARYILHLVSNPENSTKIIFFTTQYMHS 486
           +++ ++ILHL   P  S +++   T+++HS
Sbjct: 459 VILLQHILHLTRQPMISMELLEHLTEHLHS 488


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 465 KQMIFRFTMHILRSKKYDFSTIFRI 539
           K+ IF   +HI  S+K+DFS   RI
Sbjct: 6   KKNIFFKIIHIKSSRKFDFSNAIRI 30


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 496 YCVVKNMILVLFSGFETKC 552
           YC V N I+ +F+  +TKC
Sbjct: 633 YCAVCNSIVAIFNPSQTKC 651


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 598 IFFKKKPI*SSPGIYCI*FQILKIVLKSYFL 506
           +FF   PI  S  I+C+  Q L IVL S FL
Sbjct: 258 LFFFYLPIVMSILIFCLPTQALFIVLSSVFL 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,132
Number of Sequences: 5004
Number of extensions: 45751
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)