Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20815
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)                      31   0.59 
SB_20602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_34225| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  

>SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)
          Length = 695

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 218 CLSYPCHENPACRLRDKK 165
           C+S PCHE   CRL D+K
Sbjct: 163 CVSNPCHEGATCRLLDEK 180


>SB_20602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 272 PAYFHYSRLLNARYLKYRCLSYP 204
           P Y+HYS L   RY  Y  L+ P
Sbjct: 14  PRYYHYSALATPRYYHYSALATP 36



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 272 PAYFHYSRLLNARYLKYRCLSYP 204
           P Y+HYS L   RY  Y  L+ P
Sbjct: 25  PRYYHYSALATPRYYHYSALATP 47


>SB_34225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 581 TYLVIARYILHLVSNPENSTKIIFFTTQYMHSEPEN 474
           +Y  + RY++ LV NP  S  +I +   + HS   N
Sbjct: 468 SYSDLERYLMSLVDNPLTSQHVIIYCDLHGHSRKPN 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,264,864
Number of Sequences: 59808
Number of extensions: 306062
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)