Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20815
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 108 CFLFCFLIWLVPLNYCSLNLTHQNRIYR 25
           CF++  L+  V +NY        N +YR
Sbjct: 372 CFIYASLLEFVCVNYVGRKRPMHNVVYR 399


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 108 CFLFCFLIWLVPLNYCSLNLTHQNRIYR 25
           CF++  L+  V +NY        N +YR
Sbjct: 341 CFIYASLLEFVCVNYVGRKRPMHNVVYR 368


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 108 CFLFCFLIWLVPLNYCSLNLTHQNRIYR 25
           CF++  L+  V +NY        N +YR
Sbjct: 392 CFIYASLLEFVCVNYVGRKRPMHNVVYR 419


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 108 CFLFCFLIWLVPLNYCSLNLTHQNRIYR 25
           CF++  L+  V +NY        N +YR
Sbjct: 341 CFIYASLLEFVCVNYVGRKRPMHNVVYR 368


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 557  ILHLVSNPENSTKIIFFTTQY 495
            +L L   P+N   I++FT QY
Sbjct: 1516 VLRLHVWPDNGCPILYFTIQY 1536


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 557  ILHLVSNPENSTKIIFFTTQY 495
            +L L   P+N   I++FT QY
Sbjct: 1512 VLRLHVWPDNGCPILYFTIQY 1532


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 130 NNCLQCLIFRCIFLSRSRQA 189
           N C  C + +CI +  SR A
Sbjct: 118 NRCQYCRLKKCIAVGMSRDA 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,926
Number of Sequences: 438
Number of extensions: 3007
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)