Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20814
(490 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 27 2.0
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 26 2.7
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 26 2.7
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 2.7
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 24 2.8
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 3.5
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos... 26 3.5
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 4.6
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 6.1
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 8.1
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 25 8.1
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 299 VEKSMPSIYMPPEEMYSETRQYVLRRADSV 388
+ +S+P++ PP + +SET Y DS+
Sbjct: 227 IHESLPALQNPPIQSHSETDLYADEELDSI 256
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 99 IPIVVSGIGVTEKLYFKIRESNPLF 173
IP++ SG+ K+ +R+SNP+F
Sbjct: 263 IPLMASGLLEAHKVQSIVRDSNPMF 287
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -1
Query: 295 IQRLAKELVQLYDRVSRS*TAGSASCMPVARDFSPRDIDQ 176
++R + L+Q YD+ R C+P + D D +Q
Sbjct: 18 VERFRESLIQFYDKTKRILPWRKKECIPPSEDSPLEDWEQ 57
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 359 DASLSTSPLEAYKLKAYSSRPHPATCKGTCPVVRSSFQELN 237
D S+S ++ +Y S P + T PV+ SSF++L+
Sbjct: 340 DISVSQISVDEKICTSYESLPKIQLEQNTAPVIESSFEQLD 380
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 23.8 bits (49), Expect(2) = 2.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 388 DATRHSCLGFADDGGHRDRP 447
D+ H CL F + GHR +P
Sbjct: 217 DSRIHGCLFFINPNGHRLQP 236
Score = 20.6 bits (41), Expect(2) = 2.8
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +1
Query: 250 KLDRTTGQVPLQVAGC 297
K+DR T ++ ++ GC
Sbjct: 208 KMDRETSEIDSRIHGC 223
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 156 ESNPLFRWSMSLGEKSLATGIQLALPAVQLLE 251
ES +F W +GE+ IQ +L A+QLLE
Sbjct: 431 ESFMMFVWKKKIGEELKKWIIQDSLKALQLLE 462
>SPCC645.11c |mug117||meiotically upregulated gene
Mug117|Schizosaccharomyces pombe|chr 3|||Manual
Length = 186
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 371 GARIDASLSTSPLEAYKLKAYSSRPHPATCKGT--CPVVR 258
G+RI ++ S + + Y + HP CKG+ CP++R
Sbjct: 44 GSRITSNYRRS---LFNMLGYDNSVHPNNCKGSFLCPMLR 80
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 4.6
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +2
Query: 206 SDRHTASTPGGSAPGNSIVQLDKFLCKSLDVVEKSMPS 319
+D + G PG S KF CK+ + +PS
Sbjct: 61 NDDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPS 98
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 293 DVVEKSMPSIYMPPEEMYSETRQYVLR 373
D + ++ + +PPEE Y+E VLR
Sbjct: 354 DGKKSAVRRVVLPPEEAYAEATSVVLR 380
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 352 DASIRAPTCGFCDATRHSCLGFADD 426
DAS+R CGF A ++C F +D
Sbjct: 881 DASLRGD-CGFLSANLYACSIFGED 904
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 8.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 153 RESNPLFRWSMSLGEKSLATGIQLALPAVQL 245
R S P+ SLG +SLAT A P VQL
Sbjct: 6 RRSIPITARLPSLGIRSLATATASAHPPVQL 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,525
Number of Sequences: 5004
Number of extensions: 44135
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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