Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20814
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0768 + 5742938-5743196,5743291-5744729 30 1.1
11_03_0151 - 10816905-10816977,10817090-10817421,10817884-108179... 29 1.5
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 2.0
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 29 2.0
01_06_0743 + 31622683-31623723 29 2.0
10_07_0120 + 13076748-13076955,13077060-13077370 29 2.6
08_01_0434 + 3809681-3810016,3810039-3811100 28 4.6
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522... 27 6.1
11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557... 27 8.1
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076 27 8.1
05_01_0540 + 4663838-4664122 27 8.1
04_04_0756 - 27817846-27819224,27819961-27820093,27820440-278205... 27 8.1
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -3
Query: 197 LTQGHRPTKERVGLPYFEVQFFCHSNTGHDDRYGCNP*DHFKIRHGWLI 51
L Q RP LPY V H T HD + C+ HF R WL+
Sbjct: 249 LVQSDRPATSVSELPYVFVDLD-HGCTYHDKLFYCDDERHFLHRAPWLL 296
>11_03_0151 -
10816905-10816977,10817090-10817421,10817884-10817967,
10818045-10818092,10818233-10818287,10818378-10818433,
10818543-10818627,10819810-10819844
Length = 255
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 309 LFSTTSSDLQ-RNLSSCTIEFPGAEPPGVLAVCRSLGTSHPGT*TNEREG-WTPLF 148
L+ST L +N ++EF P G L +CR L TS +EG +TPLF
Sbjct: 185 LYSTIDFFLPAKNPQLKSLEFLHLAPEGSLRICRFLATSVDSLVKGGKEGIFTPLF 240
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 197 EVPSDRHTASTPGGSAPGNSIVQLDKFLCKSLDVVEKSMPSIYMPPEEMYSETR 358
E P HT TPG P + + + + + V+K I +PPE + S+TR
Sbjct: 588 ETPPASHTFPTPGVKIPDANPAKFIPDVVRPM--VDKPSRGIVIPPEAVESQTR 639
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 81 VSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALP 233
V R+ I V+S + +K+ + P FRW S G+ G+ +A+P
Sbjct: 304 VRRLYDIANVLSSLNFIDKIQ-QADSRKPAFRWLGSAGKPKAENGVTIAVP 353
>01_06_0743 + 31622683-31623723
Length = 346
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 409 LGFADDGGHRDRPRPCAHHRRQNTSTS 489
LG+ DG R RPRP ++Q T+T+
Sbjct: 142 LGYPADGSGRGRPRPYPRGQQQQTTTT 168
>10_07_0120 + 13076748-13076955,13077060-13077370
Length = 172
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 452 GRGRSRWPPSSANPRQLCLVAS 387
GRGR RW PS+A CL A+
Sbjct: 4 GRGRRRWCPSTARTGTACLSAA 25
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 27.9 bits (59), Expect = 4.6
Identities = 35/114 (30%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Frame = -3
Query: 431 PPSSANPRQLCLVASQNPHVGARIDASLSTSPLE-AYKLKAYSSRPHPATCKGTCPVVRS 255
PP +A P L P VG ID + STS E A K K R P + P
Sbjct: 8 PPHTAPPPPLL------PAVGYLIDVAPSTSRREGAAKRKKGPCRRLPCSLPALPPASSG 61
Query: 254 SFQ--ELNRREC*LYAGR*GLLTQGHRPTKERVGLPYFEVQFFCHSNTGHDDRY 99
+ E RR GR G + P +ER G+P F + H + DD +
Sbjct: 62 GGEAGERGRRR-----GRLGF-SPPEPPARERRGVPMFNCTVYYHIDRFIDDEH 109
>12_02_1096 +
26050224-26051058,26051599-26051831,26051940-26052230,
26052860-26052988,26053082-26053255,26053334-26053547,
26053881-26053968,26054195-26054239,26056969-26057015,
26057441-26057727,26057812-26058051,26058141-26058257
Length = 899
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 482 DVFCRRW*AHGRGRSRW 432
++ RRW A GRGR RW
Sbjct: 94 EILRRRWEAGGRGRRRW 110
>11_08_0102 -
28354880-28355056,28355159-28355376,28355634-28355712,
28356451-28356519,28356602-28356681,28356818-28356925,
28357103-28357169,28357894-28357959,28358042-28358119,
28358198-28358250,28359542-28359575,28359851-28359865,
28360082-28360109,28360628-28360716,28361688-28361810,
28362192-28362296,28362381-28362485,28362924-28363139,
28364656-28364845,28365193-28365418,28366096-28366162
Length = 730
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +2
Query: 263 QLDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQYV--LRRADSVTRLGTAVLD 415
+++KF+ K+LD E + +Y+ PE++ S++++++ L + RL +D
Sbjct: 182 EVEKFVYKALDKGEGELKILYVTPEKI-SKSKRFMSKLEKCHHAGRLSLIAID 233
>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
Length = 748
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 203 PSDRHTASTPGGSAPGNSIVQLDKFLCKSLDVVEKSMPSIYMP 331
P D+H A T + P ++ Q+ + LC S ++ +S +I +P
Sbjct: 519 PIDKHFARTSQVTLPASATAQIIQALC-SCHIINRSTGAINLP 560
>05_01_0540 + 4663838-4664122
Length = 94
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 355 ASIRAPTCGFCDATRHSCLGFADDGGHRDRPRPCAHHRRQNTSTS 489
A+I + + C A RH ADD G + RP + + S+S
Sbjct: 4 AAIASASASICSAYRHLSATPADDNGDDNGARPLSSSEELSKSSS 48
>04_04_0756 -
27817846-27819224,27819961-27820093,27820440-27820519,
27821378-27821609
Length = 607
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = -3
Query: 437 RWPPSSANPRQLCLVASQNPHVGARIDASLSTSPLEAYKLKAYSSRPHPATCKGTCPV 264
R PP S++P + CL S+ P +++ A ++T+ L ++ YS + H + +G +
Sbjct: 8 RPPPPSSSPHRRCL--SRPP--TSQLTARITTAELPSFPRGHYSGQVHRGSGEGAVQI 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,186,217
Number of Sequences: 37544
Number of extensions: 316412
Number of successful extensions: 1012
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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