Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20814
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24)                  35   0.031
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)                    28   4.7  
SB_1960| Best HMM Match : Transposase_21 (HMM E-Value=8.1e-05)         28   4.7  
SB_54401| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_49304| Best HMM Match : Calx-beta (HMM E-Value=1.9)                 27   8.3  

>SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24)
          Length = 536

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +3

Query: 45  KTNQPAMPNLEVVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQL 224
           +T QP++   + V +   IP+V + +      Y   RE N L + S +  E S  T I+ 
Sbjct: 16  ETLQPSLQEQDFVRKAGDIPVVKTAVEKITSFYHSARERNHLTKVSFAAAELSFWTAIKT 75

Query: 225 ALPAVQLL 248
           +  A  LL
Sbjct: 76  SQFAYSLL 83


>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
          Length = 626

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 39  MTKTNQPAMPNLEVVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSL 206
           +TK  + + P + V SR+ +   + +   +T+K   KI  + P+   S+ LG K L
Sbjct: 140 LTKLKKGSSPVIGVASRLGNKKEIDANGELTDKELAKIETAKPMTSASLKLGNKLL 195


>SB_1960| Best HMM Match : Transposase_21 (HMM E-Value=8.1e-05)
          Length = 350

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 371 GARIDASLSTSPLEAYKLKAYSSRPHPATC 282
           G ++  SLST P + YK+K  +SR     C
Sbjct: 160 GKQVSQSLSTGPSQHYKIKMAASRKFCVEC 189


>SB_54401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 172 KRGLDSLILKYNFSVTPIPDTTIGMD 95
           +RGL  + L YN S T I DTT+G D
Sbjct: 21  ERGLPEIPLYYNVSTTYI-DTTVGRD 45


>SB_49304| Best HMM Match : Calx-beta (HMM E-Value=1.9)
          Length = 126

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 172 KRGLDSLILKYNFSVTPIPDTTIGMD 95
           +RGL  + L YN S T I DTT+G D
Sbjct: 74  ERGLPEIPLYYNVSTTYI-DTTVGRD 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,286,460
Number of Sequences: 59808
Number of extensions: 368061
Number of successful extensions: 1066
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)