Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20814
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23648-5|AAN63385.1|  381|Caenorhabditis elegans Cyclin t protei...    33   0.15 
L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protei...    33   0.15 
AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical...    29   1.8  
U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical ...    28   3.2  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF014940-4|AAB63936.2|  322|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z11115-10|CAA77459.1|  503|Caenorhabditis elegans Hypothetical p...    27   7.3  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      27   7.3  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    27   7.3  
Z81513-11|CAB04184.2|  254|Caenorhabditis elegans Hypothetical p...    27   9.7  

>L23648-5|AAN63385.1|  381|Caenorhabditis elegans Cyclin t protein
           1.2, isoform b protein.
          Length = 381

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
 Frame = -3

Query: 395 VASQNPHVGARIDASLSTSPLEAYKLKAYSSRPHPATCKGTCPVVRSSF----------- 249
           +    P V + +  S S+S L+   L++Y  RP P +     P  R SF           
Sbjct: 114 IVGMPPQVSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVE 173

Query: 248 QELNRREC*LYAGR*GLLTQGHRPTKERVGLPYFEVQFFCHSNTGHDDR 102
           QEL  +     A +  +   GHRP+     L +        +N+ H +R
Sbjct: 174 QELMEQRM-KEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNR 221


>L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protein
           1.2, isoform a protein.
          Length = 555

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
 Frame = -3

Query: 395 VASQNPHVGARIDASLSTSPLEAYKLKAYSSRPHPATCKGTCPVVRSSF----------- 249
           +    P V + +  S S+S L+   L++Y  RP P +     P  R SF           
Sbjct: 288 IVGMPPQVSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVE 347

Query: 248 QELNRREC*LYAGR*GLLTQGHRPTKERVGLPYFEVQFFCHSNTGHDDR 102
           QEL  +     A +  +   GHRP+     L +        +N+ H +R
Sbjct: 348 QELMEQRM-KEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNR 395


>AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical
           protein C17H12.9 protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 215 HTASTPGGSAPGNSIVQLDKFLC--KSLDVVEKSMPSIYMPPEEMYS 349
           H+AS+   S+  +S +QLD ++C   +++++E+  P    P E  YS
Sbjct: 399 HSASSSSASSSSSSSMQLDNYICDINTINILEEPSPE---PREIKYS 442


>U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical
           protein C14F5.4 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 48  TNQPAMPNLEVVSRVASIPIVVSG---IGVTEKLYFKIRESNPLFRWSMSLGEKSLATGI 218
           TN+ A   L     V S    VSG   + +  K YF  ++S+PL +  + LG  ++A  I
Sbjct: 127 TNRNAKSTLTTKDLVVSYSTAVSGALAMAIGLKTYFAKKQSSPLAQRLVPLGAVAVANAI 186

Query: 219 QLAL 230
            + +
Sbjct: 187 NIPM 190


>AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical
           protein F18A12.7 protein.
          Length = 666

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 245 PGNSIVQLDKFLCKSLDVVEKSM-PSIYMPPEEMYSETRQYVLRRA 379
           P N  +  + F+ K  +++E  + P I + P+E+   TR Y+ R+A
Sbjct: 87  PANESLSNETFIFKLAELLEGPLKPFIVVSPDEIIKVTRDYLERKA 132


>AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical
           protein F13H6.1 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 233 GGSAPGNSIVQLDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQ 361
           GGS P  SI      L ++  ++  S PSI +PP+   S   Q
Sbjct: 584 GGSPPERSIRPTPSALAEATSLLALSAPSISVPPQPQASTVGQ 626


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical protein
            K10D2.1a protein.
          Length = 1223

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 87   RVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGE 197
            R+ S+P++   IGVTE   + + E+  L  W++ LG+
Sbjct: 984  RLDSLPVL---IGVTEHAAYALTENGRLSTWNLKLGK 1017


>AF014940-4|AAB63936.2|  322|Caenorhabditis elegans Hypothetical
           protein W02D7.6 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +1

Query: 304 EEYAFNLYASRGDVLRDASIRAPTCGFCDATRHSCLG 414
           +E+   L +SR   LR   IRA TCG C  T  S LG
Sbjct: 36  DEFRRRLASSRAHELR--GIRAWTCGLCGTTIPSKLG 70


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
           protein C05C12.3 protein.
          Length = 1694

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 349 RDASIRAPTCGFCDATRHSCLGFADDGGHRD-RPRPC 456
           RD ++R  TC   +    +CL  A + GHR     PC
Sbjct: 797 RDQTLRLLTCELANWGDETCLSLAANNGHRKFLAHPC 833


>Z11115-10|CAA77459.1|  503|Caenorhabditis elegans Hypothetical
           protein ZK637.10 protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 113 HDDRYGCNP*DHFKIRHGW 57
           H D+YG N  D  KI+H W
Sbjct: 90  HADKYGWNGIDQEKIKHDW 108


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 349 RDASIRAPTCGFCDATRHSCLGFADDGGHRD-RPRPC 456
           RD ++R  TC   +    +CL  A + GHR     PC
Sbjct: 797 RDQTLRLLTCELANWGDETCLSLAANNGHRKFLAHPC 833


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1681

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 349 RDASIRAPTCGFCDATRHSCLGFADDGGHRD-RPRPC 456
           RD ++R  TC   +    +CL  A + GHR     PC
Sbjct: 784 RDQTLRLLTCELANWGDETCLSLAANNGHRKFLAHPC 820


>Z81513-11|CAB04184.2|  254|Caenorhabditis elegans Hypothetical
           protein F26D2.14 protein.
          Length = 254

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 325 YASRGDVLRDASIRAP-TCGFCDAT 396
           Y++  DV+RDA++  P TC  C  T
Sbjct: 88  YSAHPDVIRDAALACPKTCALCCMT 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,627,921
Number of Sequences: 27780
Number of extensions: 255715
Number of successful extensions: 744
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)