Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20814
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 95  IHTDRRVRYWSDRKIVLQ 148
           I  DRR R+ SDR + L+
Sbjct: 335 IQNDRRTRHLSDRVVALE 352


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 98  HTDRRVRYWSDRKIVLQN 151
           H D R+RYW    +V+ +
Sbjct: 275 HNDGRLRYWRTPSVVVSD 292


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 234 AVQLLETRSYNWTSSFASRWMWSRRV 311
           A+Q L++ ++    +   R MWS ++
Sbjct: 1   AIQCLQSSAFKEIKTLPDRGMWSSKI 26


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 234 AVQLLETRSYNWTSSFASRWMWSRRV 311
           A+Q L++ ++    +   R MWS ++
Sbjct: 54  AIQCLQSSAFKEIKTLPDRGMWSSKI 79


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 309 VCLQFICLQRRCTQRRVN 362
           V L F+    RCTQ +VN
Sbjct: 10  VLLTFLLHPSRCTQGKVN 27


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 309 VCLQFICLQRRCTQRRVN 362
           V L F+    RCTQ +VN
Sbjct: 10  VLLTFLLHPSRCTQGKVN 27


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 225 ALPAVQLLETRSYNWTSSF 281
           A+P V   ET +  WT  F
Sbjct: 226 AIPTVPYTETETETWTRVF 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,635
Number of Sequences: 438
Number of extensions: 3304
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)