Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20814
(490 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ... 29 1.7
At1g53320.1 68414.m06043 F-box family protein / tubby family pro... 29 1.7
At4g22850.1 68417.m03300 expressed protein 28 2.9
At5g15850.1 68418.m01854 zinc finger protein CONSTANS-LIKE 1 (CO... 27 5.1
At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 27 5.1
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ... 27 9.0
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 27 9.0
At3g14610.1 68416.m01850 cytochrome P450, putative similar to GB... 27 9.0
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 27 9.0
>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 316 FNLYASRGDVLRDASIRAPTCGFCDATRHSCLGFADDGGHR 438
FN + R VL +I P CG C ++ C+G D G+R
Sbjct: 564 FNKWVCRVQVLPKCNISRPLCGSC---KNRCIGKIYDVGYR 601
>At1g53320.1 68414.m06043 F-box family protein / tubby family
protein (TULP7) similar to Tubby related protein 2
(Tubby-like protein 2) (P4-6 protein) (Fragment)
(SP:P46686) [Mus musculus]; similar to phosphodiesterase
(GI:467578) [Mus musculus]; similar to Tubby protein
homolog 1. (Swiss-Prot:Q09306) [Caenorhabditis elegans]
contains Pfam profile: PF01167: Tub family; contains
Pfam PF00646: F-box domain
Length = 379
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 208 RPAYS*HSRRFSSWKLDRTTGQVPLQVAGCGREEYAFNLYASRGDVLRDASIRAPT 375
+P+ SRRF+S ++ + QVP G Y FNL SRG +++R P+
Sbjct: 201 KPSNGKASRRFASKQI---SPQVPAGNFEVGHVSYKFNLLKSRGPRRMVSTLRCPS 253
>At4g22850.1 68417.m03300 expressed protein
Length = 296
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 164 VGLPYFEVQFFCHSNTGHDDRY 99
V LPYF Q FCH G +RY
Sbjct: 148 VSLPYFIGQLFCHKIQGWLERY 169
>At5g15850.1 68418.m01854 zinc finger protein CONSTANS-LIKE 1 (COL1)
identical to Zinc finger protein CONSTANS-LIKE 1
SP:O50055 from [Arabidopsis thaliana]
Length = 355
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +1
Query: 289 AGCGREEYAFNLYASRGDVLR--DASIRAPTCGFCDATRHSCLGFADDGGHRDRPRPCAH 462
+ C + +A N ASR + +R + RAP FC A S D H P H
Sbjct: 33 SSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRH 92
Query: 463 HR 468
R
Sbjct: 93 QR 94
>At3g61670.1 68416.m06911 expressed protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 790
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 185 HR-PTKERVGLPYFEVQFFCHSNTGHDDRYGCNP*DHFKIRHGWLICFRHC 36
HR P R PYF Q+ ++N GH D + P + H C+ HC
Sbjct: 285 HRFPIHGRGPHPYFSGQYVGNNNNGH-DLFDAYPQQNGHFHHSSCSCY-HC 333
>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 685
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 359 DASLSTSPLEAYKLKAYSSRPHPATCKGT 273
D L S A ++K Y PHP T KGT
Sbjct: 406 DFILHESCANAPRMKRYPLYPHPLTLKGT 434
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 26.6 bits (56), Expect = 9.0
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +2
Query: 155 GVQPSLSLVYVPG*EVPSDRHTASTPGGSAPGNSIV 262
G PS S+ P VPS T S PGGS P SIV
Sbjct: 421 GSPPSPSISPSPPITVPSPPTTPS-PGGSPPSPSIV 455
>At3g14610.1 68416.m01850 cytochrome P450, putative similar to
GB:Q05047 from [Catharanthus roseus]
Length = 512
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 135 KLYFKIRESNPLFRWSMSLGEKSLATGIQLALPAV 239
+LY + + + M LGE +L GIQ+ LP +
Sbjct: 381 RLYPPVAQLKRVVNKEMKLGELTLPAGIQIYLPTI 415
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 12 VLYLSTAPTMTKTNQPAMPNLEVVSRVASIPIVVSGIGVTEKLYFKIRES-NPLFRWSMS 188
++YL T++ +QP P++ + SR+ I +G V E L + + L+ W
Sbjct: 545 IMYLVAPSTVSSRSQP-QPSIRLTSRILKIAKSYNGQDVREGLTGNLSATLEQLYAWEKK 603
Query: 189 L 191
L
Sbjct: 604 L 604
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,992,918
Number of Sequences: 28952
Number of extensions: 239706
Number of successful extensions: 678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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