Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20809
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    34   0.010
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    31   0.052
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           31   0.069
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   2.0  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   3.4  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    25   4.5  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   4.5  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   4.5  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   6.0  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   6.0  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    24   7.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    24   7.9  

>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 264 HWLKVDFNRWQDEDE 308
           HWL+ DF+RW DEDE
Sbjct: 108 HWLRTDFDRWVDEDE 122


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 31.5 bits (68), Expect = 0.052
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 124 VLIPLYAEVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKRN 261
           VL PLY E+ P+KS +      +E+ L K KV E  W +L     N
Sbjct: 233 VLDPLYEEIVPEKSSFKLFSSKVEITLIK-KVSEIKWEALVKSPAN 277


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 31.1 bits (67), Expect = 0.069
 Identities = 18/82 (21%), Positives = 39/82 (47%)
 Frame = +1

Query: 22  FLTFNVECEKPDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKKSMWVNKGRLIEVL 201
           F+ FN +  +P + I P+S   KG     K+    LIP   ++ P   +  +K  + + +
Sbjct: 211 FVAFNDDIRRPILAILPES---KGFAATGKRFTVFLIPTVRQIFPVSKLLPHKNAIRDFM 267

Query: 202 LAKEKVDEPYWPSLTSDKRNTI 267
             +E    P++ +   +++N +
Sbjct: 268 EHEELKPTPFYNNSVLEEQNLL 289


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -3

Query: 224 SSTFSFANSTSINLPLLTHMLFLGSTSA*SGIKTSCIFFSGSHIPLN---VIDLGSMFIS 54
           SST S ++S+S + P+ + +    S+SA S + +S    SGS    +   V    +  IS
Sbjct: 152 SSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASSNSTIS 211

Query: 53  GFSHSTLNVKKIRA 12
           GFS ST +     A
Sbjct: 212 GFSTSTTSASSSAA 225


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 267 WLKVDFNRWQDEDESGDDLDNMNDMFSDKDMNIQFGGD 380
           ++ V  +RW D D S +D++     +   +++ + GGD
Sbjct: 70  FITVILDRWYDGDPSNNDIEKTPFEYDISEVSFRNGGD 107


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 119 CIFFSGSHIPLNVIDLGSMFI 57
           CIFFS + +P  +I L S F+
Sbjct: 329 CIFFSSTKVPCQLIRLPSDFV 349


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 136 LYAEVDPKKSMWVNKGRLIEVLLAKEKVD 222
           LYA V P KS+   KG+ +++++ +E  +
Sbjct: 102 LYANVRPVKSLDGAKGKPVDLVIVRENTE 130


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 324 DNMNDMFSDKDMNIQFGGDNEKDDSSS 404
           D   D+F D ++  +  GDN++ D SS
Sbjct: 59  DGTLDLFGDSELEKEQKGDNQETDYSS 85


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +3

Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGG----DNEKDDSSS 404
           DE++ G+DL++ ++   + D  ++ G     D+E DD  S
Sbjct: 351 DEEDDGEDLESEDEEVDNSDDIVEDGDNAFVDDEDDDKDS 390



 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 267 WLKVDFNRWQDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKD 392
           W+  + +  +D +   +++DN +D+  D D       D++KD
Sbjct: 348 WVADEEDDGEDLESEDEEVDNSDDIVEDGDNAFVDDEDDDKD 389


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 315 DDLDNMNDMFSDKDMNIQFGGDNEKDDSSSG 407
           DDLD++    SD+D N   G D  ++    G
Sbjct: 28  DDLDDVLSSSSDEDNNENVGQDYAEESGGEG 58


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 103 PEKKMHEVLIPLYAEVDPKKSMWVNKGR 186
           P KK+ + L  L A  DPK  +W+  GR
Sbjct: 587 PSKKLLDNLATLAA--DPKNQVWIISGR 612


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 315 DDLDNMNDMFSDKDMNIQFGGDNEKDDSSSG 407
           DD+D    +FSD D +++   D+E    S G
Sbjct: 318 DDIDVKEPLFSDNDEDVE-NSDSEDGSESIG 347


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 107 SGSHIPLNVIDLGSMFISGFSHSTLNVKKIRAFR 6
           S ++IP++  D     ++G++ S  N +K+RA R
Sbjct: 109 SSNNIPISYRDNLLSHVNGYARSMHNDRKVRASR 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,606
Number of Sequences: 5004
Number of extensions: 33777
Number of successful extensions: 126
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)