Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20809
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical pr...    38   0.003
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        28   2.3  
AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical...    28   2.3  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    28   2.3  
AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z75547-2|CAA99909.2|  622|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z75547-1|CAA99908.2|  621|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    27   5.2  
AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical ...    27   5.2  
AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical ...    27   5.2  
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z95619-4|CAB09113.2|  397|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal prote...    26   9.1  
U40029-8|AAA81128.2|  275|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeo...    26   9.1  
U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeo...    26   9.1  

>U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical
           protein ZC395.10 protein.
          Length = 175

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +3

Query: 258 KHHWLKVDFNRWQDEDESGDDLD 326
           K HWLKVDF +W+DEDE  +  D
Sbjct: 94  KVHWLKVDFGKWKDEDEDDEAED 116


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = +1

Query: 49  KPDINIEPKSITFKG--ICEPEKKMHEVLIPLYA----EVDPKKSMWVNKGRLIEVLLAK 210
           K  +  EP ++ +    +   +  MH+V    Y     + +P KS+W++ GR  E  L +
Sbjct: 16  KKTMQFEPSTLIYDAAKLIREKFAMHDVNANEYGIFRLDENPSKSLWMDNGRTFEHYLVR 75

Query: 211 EKVDEPY 231
            K +  Y
Sbjct: 76  NKDEIEY 82


>AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11b protein.
          Length = 996

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = +1

Query: 49  KPDINIEPKSITFKG--ICEPEKKMHEVLIPLYA----EVDPKKSMWVNKGRLIEVLLAK 210
           K  +  EP ++ +    +   +  MH+V    Y     + +P KS+W++ GR  E  L +
Sbjct: 16  KKTMQFEPSTLIYDAAKLIREKFAMHDVNANEYGIFRLDENPSKSLWMDNGRTFEHYLVR 75

Query: 211 EKVDEPY 231
            K +  Y
Sbjct: 76  NKDEIEY 82


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11a protein.
          Length = 2553

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = +1

Query: 49  KPDINIEPKSITFKG--ICEPEKKMHEVLIPLYA----EVDPKKSMWVNKGRLIEVLLAK 210
           K  +  EP ++ +    +   +  MH+V    Y     + +P KS+W++ GR  E  L +
Sbjct: 16  KKTMQFEPSTLIYDAAKLIREKFAMHDVNANEYGIFRLDENPSKSLWMDNGRTFEHYLVR 75

Query: 211 EKVDEPY 231
            K +  Y
Sbjct: 76  NKDEIEY 82


>AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical
           protein C55B7.5 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 294 QDEDESGDDLDNMNDMFSDKDMNIQFGGDN-EKDDSS 401
           +DE+E  DD +N+N+   + D +     DN EK ++S
Sbjct: 274 EDEEEGDDDEENLNNSVEELDSDDYASDDNIEKSNNS 310


>Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDD 395
           D D+  DD D+ +D   D D     G D EKDD
Sbjct: 255 DLDDDDDDEDDDDDDGDDDDDEKDDGNDAEKDD 287


>Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDD 395
           D D+  DD D+ +D   D D     G D EKDD
Sbjct: 255 DLDDDDDDEDDDDDDGDDDDDEKDDGNDAEKDD 287


>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 294 QDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSSG 407
           +D+DE   D+D+ ++   D + + +   D+E DD   G
Sbjct: 843 EDDDEDDGDMDDDDEDDEDAEDDDEVDDDDEDDDEDGG 880


>Z75547-2|CAA99909.2|  622|Caenorhabditis elegans Hypothetical
           protein R11D1.1b protein.
          Length = 622

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSS 404
           DED+SGDD +N ++  ++ D NI+    N     +S
Sbjct: 555 DEDDSGDDGENGDENDNEND-NIESSSSNSDSSDAS 589


>Z75547-1|CAA99908.2|  621|Caenorhabditis elegans Hypothetical
           protein R11D1.1a protein.
          Length = 621

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSS 404
           DED+SGDD +N ++  ++ D NI+    N     +S
Sbjct: 554 DEDDSGDDGENGDENDNEND-NIESSSSNSDSSDAS 588


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
           protein B0207.5 protein.
          Length = 3279

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 62  TLNLNRLRSKEYANQKKKC 118
           T+N+++L  KEY   KKKC
Sbjct: 769 TVNVDKLSDKEYKEYKKKC 787


>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
           protein Y46G5A.4 protein.
          Length = 2145

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 279 DFNRWQDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDD 395
           DF+  ++    GD      D++ ++ +N+QF  D E+DD
Sbjct: 176 DFSIEEENKPEGD-----GDIYENEGVNVQFDSDEEEDD 209


>AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5a protein.
          Length = 599

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 16  RIFLTFNVECEKPDINIEPKSI-TFKGICEPEKKMHEVLI 132
           R+F + NVE E  D N++ + + T    C  EK ++ V+I
Sbjct: 535 RLFDSVNVELENRDSNVKTEQLSTSPETCSEEKHLYIVVI 574


>AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5b protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 16  RIFLTFNVECEKPDINIEPKSI-TFKGICEPEKKMHEVLI 132
           R+F + NVE E  D N++ + + T    C  EK ++ V+I
Sbjct: 537 RLFDSVNVELENRDSNVKTEQLSTSPETCSEEKHLYIVVI 576


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 264 HWLKVDFNRWQDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDD 395
           H+L ++     +E+E  DD+ N N+  SD+  + +   D+E+DD
Sbjct: 215 HFLNIE----AEENEGEDDVVNENNESSDESEDDEEDEDDEEDD 254


>Z95619-4|CAB09113.2|  397|Caenorhabditis elegans Hypothetical
           protein H21P03.2 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 276 VDFNRWQDEDESGDDLDNMNDMFSD 350
           VD + W DE    D++D +N+M+ D
Sbjct: 151 VDKSNWCDEWIVDDNMDEINEMYDD 175


>U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform b protein.
          Length = 53

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +1

Query: 1   AQRNARIFLTFNVECEKP----DINIEPKSITFKGICEPE 108
           A R  ++ L FNVEC+ P     + IE  SI F  + + +
Sbjct: 13  ALRKKKVHLKFNVECKNPVEDGILRIEDLSIEFPSLSQDQ 52


>U40029-8|AAA81128.2|  275|Caenorhabditis elegans Hypothetical
           protein F10G7.3 protein.
          Length = 275

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 288 RWQDEDESGDDL-DNMNDMFSDKDMNIQFGGDNEKDD 395
           RW DED   + + D  N +F++ D+ +    D ++DD
Sbjct: 153 RWTDEDPVAEPVEDEANRVFAEDDL-MPLNDDGQEDD 188


>U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform a protein.
          Length = 632

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSS 404
           D  E  ++LD +ND     + +++ G + E+D+  +
Sbjct: 560 DSHEDDEELDELNDSELAYEEDVEIGDEEEEDEEQA 595


>U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform b protein.
          Length = 641

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSS 404
           D  E  ++LD +ND     + +++ G + E+D+  +
Sbjct: 569 DSHEDDEELDELNDSELAYEEDVEIGDEEEEDEEQA 604


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,843,033
Number of Sequences: 27780
Number of extensions: 185463
Number of successful extensions: 717
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)