Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20809
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   5.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   5.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -2

Query: 120 VHFFFWFAYSFERNRFRF 67
           ++ F+WFAY     R  +
Sbjct: 438 INVFYWFAYLSRSERINY 455


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 238 SLTSDKRNTIGLKWI 282
           S+  D+ N++GL W+
Sbjct: 226 SIDFDRMNSLGLSWL 240


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 238 SLTSDKRNTIGLKWI 282
           S+  D+ N++GL W+
Sbjct: 264 SIDFDRMNSLGLSWL 278


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 25  LTFNVECEKPDINIEPKSITFK 90
           +T +V C++P    EP S + K
Sbjct: 262 VTNSVTCDRPSDEAEPSSTSKK 283


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 339 CHSYCLNRLHFHL 301
           CH  C++ LH+ L
Sbjct: 293 CHILCMSDLHWQL 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,907
Number of Sequences: 438
Number of extensions: 2017
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)