Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20809
(409 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02450.1 68417.m00332 glycine-rich protein similar to several... 31 0.39
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 30 0.52
At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF052... 29 0.91
At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04... 29 1.2
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 29 1.2
At2g48110.1 68415.m06022 expressed protein 29 1.6
At5g62990.1 68418.m07903 hypothetical protein 28 2.1
At4g39740.1 68417.m05626 electron transport SCO1/SenC family pro... 28 2.8
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo... 28 2.8
At1g60410.1 68414.m06801 F-box family protein contains F-box dom... 28 2.8
At1g57590.1 68414.m06535 pectinacetylesterase, putative similar ... 28 2.8
At4g29980.1 68417.m04264 expressed protein 27 3.7
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ... 27 3.7
At3g03773.1 68416.m00384 expressed protein 27 3.7
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ... 27 4.8
At2g21420.1 68415.m02549 zinc finger protein-related contains lo... 27 4.8
At1g48400.1 68414.m05406 F-box family protein contains F-box dom... 27 4.8
At5g63740.1 68418.m08000 zinc finger protein-related 27 6.4
At5g61150.2 68418.m07672 leo1-like family protein weak similarit... 27 6.4
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 27 6.4
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 27 6.4
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 27 6.4
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 27 6.4
At1g49580.1 68414.m05559 calcium-dependent protein kinase, putat... 27 6.4
At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR ... 26 8.5
At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR ... 26 8.5
At5g02390.1 68418.m00162 expressed protein ; expression supporte... 26 8.5
At4g37740.1 68417.m05343 expressed protein identical to transcri... 26 8.5
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 26 8.5
At3g14900.1 68416.m01884 expressed protein 26 8.5
At1g55400.1 68414.m06336 hypothetical protein 26 8.5
At1g47970.1 68414.m05343 expressed protein 26 8.5
>At4g02450.1 68417.m00332 glycine-rich protein similar to several
proteins containing a tandem repeat region such as
Plasmodium falciparum GGM tandem repeat protein
(GB:U27807)
Length = 241
Score = 30.7 bits (66), Expect = 0.39
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 255 KKHHWLKVDFNRWQDEDESG 314
K H++KVD+++W DED+ G
Sbjct: 95 KPPHYVKVDWDKWVDEDDEG 114
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 30.3 bits (65), Expect = 0.52
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 255 KKHHWLKVDFNRWQDEDESGDDLDNMNDMFSDKDMNIQF-GGDNEKD 392
KKH K D + D+D+S DD D+ +D D D + + G DNEK+
Sbjct: 114 KKHKDKKKDGHN--DDDDSDDDTDDDDDDDDDDDDDDEVDGDDNEKE 158
>At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF05285:
SDA1 domain; similar to mystery 45A
(GI:16797816){Drosophila melanogaster}
Length = 804
Score = 29.5 bits (63), Expect = 0.91
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 303 DESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSS 404
+E +D D+MN+ D D++ GGD +++ + S
Sbjct: 562 EEDSNDGDDMNNTEDDSDIDTSIGGDEDEEVNDS 595
>At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 607
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSSG 407
D D+ GDD D+ D D D + GD++ DD G
Sbjct: 571 DGDDDGDDDDDDGDDGDDDDDDDGDDGDDDDDDDDGG 607
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSSG 407
D+D+ DD D+ +D D D + G D++ DD G
Sbjct: 561 DDDDGDDDDDDGDDDGDDDDDDGDDGDDDDDDDGDDG 597
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 294 QDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSSG 407
QDE E+G++LD+ +D ++ + + G++E D G
Sbjct: 175 QDETENGNELDDADDGENEVEAEDEGNGEDEGDGEDEG 212
>At2g48110.1 68415.m06022 expressed protein
Length = 1295
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 268 QWCFFYHLLMKASMAHQPFLSPIVPQLTFLC 176
++CFF H+L S P P+ TFLC
Sbjct: 337 RYCFFMHMLEILSEERDPIEGPVPRTDTFLC 367
>At5g62990.1 68418.m07903 hypothetical protein
Length = 494
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSSG 407
D D + D ++F +D+ +++ D E DD +G
Sbjct: 428 DSDLDDEYEDGFENLFDSEDLGVEYHFDEEDDDDEAG 464
>At4g39740.1 68417.m05626 electron transport SCO1/SenC family
protein similar to SP|P23833 SCO1 protein, mitochondrial
precursor {Saccharomyces cerevisiae}; contains Pfam
profile PF02630: SCO1/SenC
Length = 276
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 52 PDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKK 162
PD+ E + K + + E K +E ++P++ +DP++
Sbjct: 149 PDVGPEQLKMMSKAVDKLESKHNEKILPVFVTLDPQR 185
>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985];
T20K24.13 has been merged with T20K24.12 per suggestion
of Dr. Kristian Axelsen (axe@biobase.dk)
Length = 1172
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 43 CEKPDINIEPKSITFKGICEPEKKMHEVLIPL 138
CEKP +E G CE +K+ ++++P+
Sbjct: 852 CEKPKQQVESVGDCKSGHCEKKKQAEDIVVPV 883
>At1g60410.1 68414.m06801 F-box family protein contains F-box domain
Pfam:PF00646
Length = 406
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 40 ECEKPDINIEPKSITFKGICE--PEK-KMHEV 126
EC+ P + I+ S+ F IC+ PE K+H +
Sbjct: 223 ECDNPKVEIDSPSLEFMSICDKKPESLKIHRI 254
>At1g57590.1 68414.m06535 pectinacetylesterase, putative similar to
pectinacetylesterase precursor GI:1431629 from [Vigna
radiata]
Length = 423
Score = 27.9 bits (59), Expect = 2.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 369 IECSYLCPKTCHSYCLNR 316
I+C+Y C KTCH+ R
Sbjct: 406 IDCAYPCDKTCHNLVFRR 423
>At4g29980.1 68417.m04264 expressed protein
Length = 169
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 251 SLVNEGQYGSSTFSFANSTS-INLPLLTHMLFLGSTSA*SGIKTSCIFFSGSHI 93
++V+ G + + +F N+ +N P+LT LFL TS GI + + HI
Sbjct: 42 AMVSSGSFEDWSGAFLNNNDELNGPVLTSTLFLPKTSV-EGINATSPLVASYHI 94
>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
GI:7542336; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1112
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 294 QDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSSG 407
++EDE GDD D+M++ +D + GD+E D + G
Sbjct: 974 EEEDEDGDD-DDMDEFQTDDE---DEDGDDENPDETDG 1007
>At3g03773.1 68416.m00384 expressed protein
Length = 150
Score = 27.5 bits (58), Expect = 3.7
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 267 WLKVDFNRWQDEDE 308
++KVD+N+W DEDE
Sbjct: 98 YIKVDWNKWCDEDE 111
>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 27.1 bits (57), Expect = 4.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -2
Query: 393 HPFHYLHQIECSYLCPKTCHSYCLNRLHFHLH 298
HP H H ++ + C + C S C++ L H
Sbjct: 61 HPSHPQHPLKLNLKCGRFCCSLCISGLQVGYH 92
>At2g21420.1 68415.m02549 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 468
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSSG 407
D+D+ DD D+ +D + D D + G DN+ G
Sbjct: 410 DDDDDDDDEDDEDDGYIDSDDDDVDGDDNDDGSELDG 446
>At1g48400.1 68414.m05406 F-box family protein contains F-box domain
Pfam:PF00646
Length = 513
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 267 WLKVDFNRWQDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDD 395
W+ + + D+D+ DD D+ +D D D + D++ DD
Sbjct: 275 WVSTNDYDYSDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 317
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSSG 407
D+D+ DD D+ +D D D + D++ DD G
Sbjct: 290 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDG 326
>At5g63740.1 68418.m08000 zinc finger protein-related
Length = 226
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 297 DEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDD 395
D+D+ DD D+ +D D+D + + ++E DD
Sbjct: 92 DDDDDDDDDDDADDADDDEDDDDEDDDEDEDDD 124
>At5g61150.2 68418.m07672 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 623
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 285 NRWQDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSSG 407
+ ++++ E ++ ++ +SD+D + GG EKD SG
Sbjct: 550 DEYEEDAEEDEEERGKSNRYSDEDEEEEEGGRAEKDHRGSG 590
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 130 IPLYAEVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKRNTIGLK 276
+PL DP + VN L+E +A KV + YW + + +GLK
Sbjct: 154 MPLSELYDPSRGYLVNDTVLVEAEVAVRKVLD-YWSYDSKKETGFVGLK 201
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 130 IPLYAEVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKRNTIGLK 276
+PL DP + VN L+E +A KV + YW + + +GLK
Sbjct: 155 MPLSELYDPSRGYLVNDTVLVEAEVAVRKVLD-YWSYDSKKETGFVGLK 202
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 291 WQDEDESGDDLDNMNDMFSDKDMNIQFGGD 380
W + ES D++ + ++M D+D ++ GGD
Sbjct: 194 WTLDGESDDEVKSDSEMDVDRDTKLENGGD 223
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 255 KKHHWLKVDFNRWQDED-ESGDDLDNMNDMFSDKDMNIQFGGDNEKDDS 398
++ H LK D ++ ++D E+G D D D +KD + + D +++ S
Sbjct: 37 RESHDLKKDSSKISEKDNENGRDKDGNKDRDREKDRDREKSRDRDREKS 85
>At1g49580.1 68414.m05559 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK3 [Nicotiana tabacum]
gi|16904226|gb|AAL30820; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 606
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 196 VLLAKEKVDEPYWPSLTSDKRNTI 267
VL A DEP WP L+SD ++ +
Sbjct: 366 VLKADPSFDEPPWPFLSSDAKDFV 389
>At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 862
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 184 RLIEVLLAKEKVDEPYWPSLTSDKRNTIGL 273
+LI+ + +K+ E W SL +D+ T+GL
Sbjct: 147 KLIQTTVGLDKLVEMAWSSLMNDEIGTLGL 176
>At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 862
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 184 RLIEVLLAKEKVDEPYWPSLTSDKRNTIGL 273
+LI+ + +K+ E W SL +D+ T+GL
Sbjct: 147 KLIQTTVGLDKLVEMAWSSLMNDEIGTLGL 176
>At5g02390.1 68418.m00162 expressed protein ; expression supported
by MPSS
Length = 835
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 258 KHHWLKVDFNRWQDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSS 401
K H LK+D Q +E D LDN++++ D + + ++ D+S
Sbjct: 536 KFHALKIDDLTVQSIEEEQDGLDNISEISEDHSQSSEHETLDQTMDAS 583
>At4g37740.1 68417.m05343 expressed protein identical to
transcription activator GRL2 [Arabidopsis thaliana]
GI:21539882 (unpublished); supporting cDNA
gi|21539881|gb|AY102635.1|
Length = 535
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 408 HQSSNHPFHYLHQIECSYLCPKTCHSYCLNRLHF 307
H+++N+PF + H S L P T +Y + L F
Sbjct: 352 HRNNNNPFEFGHISSDSLLNPNTAKTYGSSFLDF 385
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 273 KVDFNRWQDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSS 401
K + + ++E+E G++ + + +K+ GG+ DDS+
Sbjct: 92 KEEEEKEEEEEEEGEEEEEEEEEEEEKEEEENVGGEESSDDST 134
>At3g14900.1 68416.m01884 expressed protein
Length = 611
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +3
Query: 267 WLKVDFNRWQDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKD 392
W++ + + D+D+ DD + ++ D +M + G+ E+D
Sbjct: 434 WIEDEADNDDDDDDDDDDDGEVEEVDDDDNMVVDVEGNVEED 475
>At1g55400.1 68414.m06336 hypothetical protein
Length = 211
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 264 HWLKVDFNRWQDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDD 395
H + +R + DE+ + +D +D+ DK + GDNE D
Sbjct: 97 HGDDAESDRVSNVDENNEAVDEQDDVEDDKTDEDEEEGDNEDGD 140
>At1g47970.1 68414.m05343 expressed protein
Length = 198
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 294 QDEDESGDDLDNMNDMFSDKDMNIQFGGDNEKDDSSSG 407
+DEDE GD+ N +D D D + D ++D G
Sbjct: 82 EDEDEEGDEDGNGDDDDDDGDDDDDDDDDEDEDVEDEG 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,256,393
Number of Sequences: 28952
Number of extensions: 170414
Number of successful extensions: 792
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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