Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20806
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    40   2e-04
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   4.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   5.4  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   7.2  
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    24   9.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    24   9.5  

>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 238 KEHVGYKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVGF 363
           K      GR I  +L K+++ E +WP LT +K + HWL+  F
Sbjct: 73  KSKYSVTGRYIFFVLYKKELQEEFWPRLTKEKLRLHWLRTDF 114



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
 Frame = +2

Query: 38  LNMTSQVTPPSVSWAQRNAR-------IFLTFNV-ECEKPDINIEPKSITFKGICEPEKK 193
           +++ +Q+  P V WAQR+ +       I+LT  + +   P IN+ P+ +           
Sbjct: 1   MSLNTQI--PEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPEKLVIDSKSGANAH 58

Query: 194 MHEVLIPLYAEVDPKKSMWVTKEG*LRYYWRKKRLMSHTGLH*QVIKRNTIGLKWDFNRW 373
            + V I  + ++D +KS +      + +   KK L           K     L+ DF+RW
Sbjct: 59  -YAVQIDFFKDIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRLTKEKLRLHWLRTDFDRW 117

Query: 374 QDEDE 388
            DEDE
Sbjct: 118 VDEDE 122


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 198 CIFFSGSHIPLNVIDLGSMFI 136
           CIFFS + +P  +I L S F+
Sbjct: 329 CIFFSSTKVPCQLIRLPSDFV 349


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 385  IFILPAIKIPL*ANGVSFYHLLMKASMAHQPFLS 284
            +FI P +K       ++ YHL +   ++  PFLS
Sbjct: 1345 VFITPLVKARTFPESLTTYHLDLLLVLSKHPFLS 1378


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 314 LH*QVIKRNTIGLKWDFNRWQDEDESGDD 400
           +H + ++ N+  +K+D+N  +DED   +D
Sbjct: 145 VHDKAVENNSDFIKFDWNSDEDEDSVSND 173


>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 289 EKVDEPYWPSLTSDKKKHHWL 351
           E++ + Y+P+L  D+K+  WL
Sbjct: 282 EQLHDKYFPNLPVDEKQMQWL 302


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 186 SGSHIPLNVIDLGSMFISGFSHSTLNVKKIRAFR 85
           S ++IP++  D     ++G++ S  N +K+RA R
Sbjct: 109 SSNNIPISYRDNLLSHVNGYARSMHNDRKVRASR 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,440
Number of Sequences: 5004
Number of extensions: 38563
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)