Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20806
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.048
SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)                   30   0.78 
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   4.2  
SB_42564| Best HMM Match : zf-DHHC (HMM E-Value=3.4)                   27   5.5  
SB_29528| Best HMM Match : Sterol_desat (HMM E-Value=6.4e-16)          27   5.5  
SB_48143| Best HMM Match : Sialidase (HMM E-Value=0.33)                27   7.3  
SB_23807| Best HMM Match : DUF885 (HMM E-Value=6.6e-16)                27   9.6  
SB_14261| Best HMM Match : ig (HMM E-Value=0)                          27   9.6  

>SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 34.3 bits (75), Expect = 0.048
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 262 RLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVGF 363
           R +E  +AK+K  E +W  L   +K+ +WLK+ F
Sbjct: 37  RYVEFSIAKQKGREFFWQRLVDSEKRPNWLKINF 70


>SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)
          Length = 701

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 247 VGYKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVGF 363
           V  KG  I VLL K + DE  WP L   K+K+ ++ + F
Sbjct: 600 VDVKGSEILVLLRKARGDE--WPRLLKSKEKYPYISIDF 636


>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +2

Query: 167 KGICEPEKKMHEVLIPLYAEVDPKKSMWVTKEG*LRYYWRKKRLMSHTGLH*QVIKRNTI 346
           + +C PE+K   +   L  +  PKK   + +   LR+ W + R    TG   + ++RN +
Sbjct: 333 ENVCRPERK-ETLFDDLDDDPMPKKKARMARREQLRHEWAESRRKGRTGRVEEDLRRNEV 391


>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1784

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 28  P*VAKHDFASNSTISIL-GSAKRSYLFNIQC 117
           P V K  F  N+T  +L G+A  SY+ NI+C
Sbjct: 611 PYVIKTGFPGNATAKLLPGNASLSYMMNIEC 641


>SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 388 FIFILPAIKIPL*ANGVSFYHLLMKASMAHQPFLSPIVPQLTFLCNP 248
           F+F+ P I +P+    +   HL++  +M      SP+ P LT   +P
Sbjct: 480 FVFLSPGIPLPIIGADLQSLHLMLTLTM------SPLTPLLTLTMSP 520


>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 224 EVDPKKSMWVTKEG*LRYY-WRKKRLMSHTGLH*QVIKRNTIGLK-WDFNRWQDEDESGD 397
           E D  +   + K G L++  WR  RL+  TGLH + + R   GL+ +D   W + D S  
Sbjct: 642 ETDTYQGRPLMKYGWLKWQIWRALRLIIDTGLHSKGLTREQ-GLELFDRYAWDNTDISRK 700

Query: 398 DLDNIE 415
           +L   +
Sbjct: 701 ELSRYQ 706


>SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1554

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 259  GRLIEVLLAKEKVDEPYWPSLTSDKKKHHWL 351
            G L+  L A+ +V +P W   T+D +K++ L
Sbjct: 915  GNLLSFLRARREVYQPTWTKTTNDPEKNYTL 945


>SB_42564| Best HMM Match : zf-DHHC (HMM E-Value=3.4)
          Length = 162

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 23  AIRK*LNMTSQVTPPSVSWAQRNARIFLTFNVECEKPDINIEP 151
           AIR   N+ S +  P V    RN  I  TF+ +CEK     +P
Sbjct: 71  AIRIKNNLMSYLPAPRVKSQLRNNDILYTFHNKCEKEQDRYKP 113


>SB_29528| Best HMM Match : Sterol_desat (HMM E-Value=6.4e-16)
          Length = 368

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -2

Query: 400 IVSTFIFILPAIKIPL*AN---GVS---FYHLLMKASMAHQPFLSPIVPQLTFLCNPHAL 239
           +V  F  ++PA  +P+ A    G+    +Y+ +   S  ++P L P  P   F  + H  
Sbjct: 218 LVFQFFIVIPAFVVPINAGVFVGILLYLYYYGMKDHSGINRPALWPWQPPTLFHDDHHKY 277

Query: 238 FRINF 224
           F +NF
Sbjct: 278 FHVNF 282


>SB_48143| Best HMM Match : Sialidase (HMM E-Value=0.33)
          Length = 317

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +2

Query: 110 FNVECEKP----DINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKKSMW 250
           F  EC  P    D+ I+ + IT     +P K  +  L  +    DPK+S W
Sbjct: 244 FEKECFTPIGMEDMRIKDEQITASSTLQPHKPYYSRLNLISFYDDPKRSAW 294


>SB_23807| Best HMM Match : DUF885 (HMM E-Value=6.6e-16)
          Length = 879

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 224 EVDPKKSMWVTKEG*LRYY-WRKKRLMSHTGLH*QVIKRNTIGLKWDFNRWQDED 385
           + D  K   + + G L++  WR  RL+  TGLH + I R+     ++   W   D
Sbjct: 630 DTDTYKDNMLQRYGMLKWQVWRAVRLIVDTGLHYRGISRSDALKMFEDYAWDKSD 684


>SB_14261| Best HMM Match : ig (HMM E-Value=0)
          Length = 1337

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 119  ECEK-PDINIEPK-SITFKGICEPEKKMHEVLIPLYAEVDPKKSMWVTKEG*LRY 277
            E EK PD+  +P  ++T+  + +  KK +    P+YA+VD KK     K G L Y
Sbjct: 1006 EKEKLPDLMQQPDPNVTYAQVDKSLKKKNREE-PMYAQVDKKKKKPKKKPGELLY 1059


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,077,133
Number of Sequences: 59808
Number of extensions: 263957
Number of successful extensions: 686
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)