Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20806
(452 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13642-6|AAG00038.1| 175|Caenorhabditis elegans Hypothetical pr... 41 4e-04
U61947-1|AAB03136.3| 667|Caenorhabditis elegans Thioredoxin red... 29 2.1
AF162693-1|AAD46625.1| 525|Caenorhabditis elegans thioredoxin r... 29 2.1
AF148217-1|AAD41826.1| 667|Caenorhabditis elegans thioredoxin r... 29 2.1
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr... 27 4.8
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 27 4.8
AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical ... 27 6.4
AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical ... 27 6.4
U58760-3|AAL02443.1| 53|Caenorhabditis elegans Ribosomal prote... 27 8.4
>U13642-6|AAG00038.1| 175|Caenorhabditis elegans Hypothetical
protein ZC395.10 protein.
Length = 175
Score = 41.1 bits (92), Expect = 4e-04
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Frame = +2
Query: 65 PSVSWAQRNARIFLTFNV-ECEKPDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKK 241
P+V WAQR + ++LT V E + ++ E + F+G + +K +E + + E+DP
Sbjct: 5 PTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKTDK--YEATLEFFDEIDPAS 62
Query: 242 SMWVTKEG*LRYYWRKKRLMSHTGLH*QVIKRNTIGLKWDFNRWQDEDESGDDLD 406
+ +K+ + Q K LK DF +W+DEDE + D
Sbjct: 63 VKHTGSSTRVVEITVQKKTPAWWPRLLQ-NKGKVHWLKVDFGKWKDEDEDDEAED 116
Score = 37.1 bits (82), Expect = 0.006
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 241 EHVGYKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVGF 363
+H G R++E+ + K+ +WP L +K K HWLKV F
Sbjct: 64 KHTGSSTRVVEITVQKKT--PAWWPRLLQNKGKVHWLKVDF 102
>U61947-1|AAB03136.3| 667|Caenorhabditis elegans Thioredoxin
reductase protein 1 protein.
Length = 667
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 176 CEPEKKMHEVLIPLYAEVDPKKSMWVTKEG*LRYYWRKKR 295
C P+K MH+ + ++ D KK W EG + + W R
Sbjct: 224 CIPKKLMHQASLLGHSIHDAKKYGWKLPEGKVEHQWNHLR 263
>AF162693-1|AAD46625.1| 525|Caenorhabditis elegans thioredoxin
reductase homolog protein.
Length = 525
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 176 CEPEKKMHEVLIPLYAEVDPKKSMWVTKEG*LRYYWRKKR 295
C P+K MH+ + ++ D KK W EG + + W R
Sbjct: 82 CIPKKLMHQASLLGHSIHDAKKYGWKLPEGKVEHQWNHLR 121
>AF148217-1|AAD41826.1| 667|Caenorhabditis elegans thioredoxin
reductase protein.
Length = 667
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 176 CEPEKKMHEVLIPLYAEVDPKKSMWVTKEG*LRYYWRKKR 295
C P+K MH+ + ++ D KK W EG + + W R
Sbjct: 224 CIPKKLMHQASLLGHSIHDAKKYGWKLPEGKVEHQWNHLR 263
>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
protein H05G16.1 protein.
Length = 1111
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 146 EPKSITFKGICEPEKKMHEVLIPLYAEVDPKKSMWVTKEG 265
EP S T PE + L PL V K++M +T EG
Sbjct: 703 EPSSGTHSSRVSPESGTYGALGPLPGRVITKENMMITPEG 742
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
protein B0207.5 protein.
Length = 3279
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 141 TLNLNRLRSKEYANQKKKC 197
T+N+++L KEY KKKC
Sbjct: 769 TVNVDKLSDKEYKEYKKKC 787
>AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5a protein.
Length = 599
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 95 RIFLTFNVECEKPDINIEPKSI-TFKGICEPEKKMHEVLI 211
R+F + NVE E D N++ + + T C EK ++ V+I
Sbjct: 535 RLFDSVNVELENRDSNVKTEQLSTSPETCSEEKHLYIVVI 574
>AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5b protein.
Length = 601
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 95 RIFLTFNVECEKPDINIEPKSI-TFKGICEPEKKMHEVLI 211
R+F + NVE E D N++ + + T C EK ++ V+I
Sbjct: 537 RLFDSVNVELENRDSNVKTEQLSTSPETCSEEKHLYIVVI 576
>U58760-3|AAL02443.1| 53|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 22, isoform b protein.
Length = 53
Score = 26.6 bits (56), Expect = 8.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +2
Query: 68 SVSWAQRNARIFLTFNVECEKP----DINIEPKSITFKGICEPE 187
S A R ++ L FNVEC+ P + IE SI F + + +
Sbjct: 9 SAKKALRKKKVHLKFNVECKNPVEDGILRIEDLSIEFPSLSQDQ 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,094,930
Number of Sequences: 27780
Number of extensions: 206989
Number of successful extensions: 481
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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