Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20806
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   6.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   6.3  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   8.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -2

Query: 199 VHFFFWFAYSFERNRFRF 146
           ++ F+WFAY     R  +
Sbjct: 438 INVFYWFAYLSRSERINY 455


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 295 VDEPYWPSLTSDKKKHHWLKV 357
           V+   WP L  ++K  H+L +
Sbjct: 507 VNSVQWPRLNPNEKSLHYLHI 527


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 295 VDEPYWPSLTSDKKKHHWLKV 357
           V+   WP L  ++K  H+L +
Sbjct: 507 VNSVQWPRLNPNEKSLHYLHI 527


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 78  QDTDGGVTCEVMFSY 34
           +D DG V+C V+ +Y
Sbjct: 59  KDADGRVSCPVLRAY 73


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 104 LTFNVECEKPDINIEPKSITFK 169
           +T +V C++P    EP S + K
Sbjct: 262 VTNSVTCDRPSDEAEPSSTSKK 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,004
Number of Sequences: 438
Number of extensions: 2249
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)