Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20806
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02450.1 68417.m00332 glycine-rich protein similar to several...    38   0.004
At5g10200.1 68418.m01181 expressed protein ; expression supporte...    31   0.36 
At3g03773.1 68416.m00384 expressed protein                             30   0.64 
At1g60410.1 68414.m06801 F-box family protein contains F-box dom...    29   1.5  
At4g39740.1 68417.m05626 electron transport SCO1/SenC family pro...    28   3.4  
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    28   3.4  
At1g49580.1 68414.m05559 calcium-dependent protein kinase, putat...    27   5.9  

>At4g02450.1 68417.m00332 glycine-rich protein similar to several
           proteins containing a tandem repeat region such as
           Plasmodium falciparum GGM tandem repeat protein
           (GB:U27807)
          Length = 241

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
 Frame = +2

Query: 65  PSVSWAQRNARIFLTFNV-ECEKPDINIEPKSI-TFKGICEPEKKMHEVLIPLYAEVDPK 238
           P V WA+   +IFLT  + + +   +N++P+ +  F     PE  ++E+ + L  +V+ +
Sbjct: 5   PEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKVNVE 64

Query: 239 KSMWVTKEG*LRYYWRKKRLMSHTGLH*QVIKRNTIGLKWDFNRWQDEDESG 394
           +S     E  +     K        L    +K+    +K D+++W DED+ G
Sbjct: 65  ESKINIGERSIFCIIEKAEPERWNKL--LRVKKPPHYVKVDWDKWVDEDDEG 114


>At5g10200.1 68418.m01181 expressed protein ; expression supported
           by MPSS
          Length = 621

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +2

Query: 179 EPEKKMHEVLIPLYAEVDPKKSMWVTKEG*LRYYWR-KKRLMSHTGLH*QVIKRNTIGLK 355
           +P+  M +  +P YAE   KK M        R  W  K+  + H G+H +  +R   G +
Sbjct: 509 DPDLSMRQNKVPDYAERLVKKQM--------RAAWLFKEAALKHGGVHRKGEEREVYGNE 560

Query: 356 WDFNRWQDEDES--GDD 400
            D + W+   ES  GDD
Sbjct: 561 TDDSEWETASESDIGDD 577


>At3g03773.1 68416.m00384 expressed protein
          Length = 150

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
 Frame = +2

Query: 65  PSVSWAQRNARIFLTFNV-ECEKPDINIEPKSITFKGICEPEKKMHEVLIPLYAEV--DP 235
           P V WAQR+ +++LT  + + +   +  EP+ +        + +  E  + LY ++  + 
Sbjct: 5   PEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEY 64

Query: 236 KKSMWVTKEG*LRYYWRKKRLMSHTGLH*QVIKRNTIGLKWDFNRWQDEDE 388
           +K++ +     + +  +K+     T L  +  ++    +K D+N+W DEDE
Sbjct: 65  RKNVGLRN---IIFSIQKEERSWWTRLL-KSEEKPAPYIKVDWNKWCDEDE 111


>At1g60410.1 68414.m06801 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 406

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = +2

Query: 119 ECEKPDINIEPKSITFKGICE--PEK-KMHEVLIPLYAEVDPKKSMWVTKEG*LRYYWRK 289
           EC+ P + I+  S+ F  IC+  PE  K+H   I  +AEV       V  +  L     +
Sbjct: 223 ECDNPKVEIDSPSLEFMSICDKKPESLKIHR--IGPFAEVTVDVEFDVEDDDPLEISKIR 280

Query: 290 KRLMSHTGLH*QVIKRNTIGLKWDFNR 370
           K L+  +  H   I   T+    D+++
Sbjct: 281 KFLVGLSTFHELTISARTLESIHDYSK 307


>At4g39740.1 68417.m05626 electron transport SCO1/SenC family
           protein similar to SP|P23833 SCO1 protein, mitochondrial
           precursor {Saccharomyces cerevisiae}; contains Pfam
           profile PF02630: SCO1/SenC
          Length = 276

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 131 PDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKK 241
           PD+  E   +  K + + E K +E ++P++  +DP++
Sbjct: 149 PDVGPEQLKMMSKAVDKLESKHNEKILPVFVTLDPQR 185


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985];
           T20K24.13 has been merged with T20K24.12 per suggestion
           of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 122 CEKPDINIEPKSITFKGICEPEKKMHEVLIPL 217
           CEKP   +E       G CE +K+  ++++P+
Sbjct: 852 CEKPKQQVESVGDCKSGHCEKKKQAEDIVVPV 883


>At1g49580.1 68414.m05559 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase CaMK3 [Nicotiana tabacum]
           gi|16904226|gb|AAL30820; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 606

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 274 VLLAKEKVDEPYWPSLTSDKK 336
           VL A    DEP WP L+SD K
Sbjct: 366 VLKADPSFDEPPWPFLSSDAK 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,407,370
Number of Sequences: 28952
Number of extensions: 189736
Number of successful extensions: 504
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)