Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20803
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   2.2  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    24   6.7  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    24   8.8  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 246 TKEPPVKKKQPVSKEELNKTTEEIEK 323
           T+   V K+ P ++EELNK  E IEK
Sbjct: 852 TQGGDVVKESPDNEEELNKEYEGIEK 877


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 273 QPVSKEELNKTTEEIEKMDL*IALSQV 353
           Q +S+ E+NK   EIEK++L +   Q+
Sbjct: 298 QRLSRTEINKEIIEIEKLELEVVQFQM 324


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 291 PLLILAVSFLLVVLWCFKIFLIFSITFRFLIYIYKF 184
           PLL+  + F  ++L+    +LIF         I KF
Sbjct: 378 PLLMNKIMFPAIILYLIMFYLIFDCILNAFAEITKF 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,072,621
Number of Sequences: 5004
Number of extensions: 16079
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)