Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20803
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   1.2  
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)                    28   2.1  
SB_22229| Best HMM Match : Arm (HMM E-Value=0)                         27   3.7  
SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28)          27   3.7  
SB_56073| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_45176| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_45175| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_9157| Best HMM Match : Fumarate_red_C (HMM E-Value=1.8)             26   8.5  
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  

>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1238

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -3

Query: 309 QSFY*VPLLILAVSFLLVVLWCFKIFLIFSITFRFLIYIY 190
           ++ + VP+++L V +    L CF +F++  I FRFL  +Y
Sbjct: 217 ETLFAVPIIVLFVGWQ--GLACFILFVLMIILFRFLAEVY 254


>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
          Length = 922

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 246 TKEPPVKKKQPVSKEELNKTTEEIEKMD 329
           T++PPV  K+PV    + K  E ++K D
Sbjct: 470 TEKPPVAAKKPVKANNVTKPVEVLKKAD 497


>SB_22229| Best HMM Match : Arm (HMM E-Value=0)
          Length = 1050

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 73  LTLFSCFFPLYFIIIQYFPTKP 8
           ++  SC+FPL F+ IQ+  TKP
Sbjct: 756 MSAVSCYFPLCFLPIQHRFTKP 777


>SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28)
          Length = 951

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 249 KEPPVKKKQPVSKEELNKTTEEIEKMDL*IALSQVIN 359
           K PP     P S+EE  K TE  E+ +  + LS  +N
Sbjct: 368 KAPPEDTDVPKSREEAGKLTEVEERQEGAVRLSTYVN 404


>SB_56073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +3

Query: 285 KEELNKTTEEIEKMDL*IALSQVINKTTT 371
           KE +N+T +E EK+ L    SQ +NKTTT
Sbjct: 121 KEYMNRTNKEGEKLKLDELCSQ-LNKTTT 148


>SB_45176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 8   RLCWKILNYNKI--QWEKTRKKGQRLMFSR 91
           R+CW     N++  +WE  ++K QRL+  R
Sbjct: 89  RICWLKQRCNEVDMRWEAAKRKAQRLIQDR 118


>SB_45175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 8   RLCWKILNYNKI--QWEKTRKKGQRLMFSR 91
           R+CW     N++  +WE  ++K QRL+  R
Sbjct: 144 RICWLKQRCNEVDMRWEAAKRKAQRLIQDR 173


>SB_9157| Best HMM Match : Fumarate_red_C (HMM E-Value=1.8)
          Length = 294

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 255 VLWCFKIFLIFSITFRFLIYIYKF----FVDFSYL-LLDIFKT*IHCF 127
           ++ CF  F++  I F F++YI       +++F  + ++D+F T I  F
Sbjct: 74  IIVCFNWFVVSIIYFGFVLYITSLSGDVYINFLLMSIIDVFNTPISWF 121


>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1868

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 189  KFFVDFSYLLLDIFKT*IHCFGFSFFQT 106
            K+F DFS+   D+FK+ +   GF  F T
Sbjct: 1110 KYFRDFSHFDNDLFKSDLGLIGFQQFVT 1137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,321,336
Number of Sequences: 59808
Number of extensions: 101124
Number of successful extensions: 368
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)