Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20803
         (371 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   2.0  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   2.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   8.2  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 246 CFKIFLIFSITFRFLIYIYKFFVDFSY 166
           C       S  FR+ + IY FF D S+
Sbjct: 320 CGSAIAYVSDVFRYGLLIYDFFKDSSF 346


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 279 VSKEELNKTTEEIEKMDL 332
           VSKEEL K  +  E+ D+
Sbjct: 38  VSKEELTKLVQGFEEQDI 55


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -3

Query: 195 IYKFFVDFSYLLLDI 151
           + +FF  FS+L+L++
Sbjct: 362 VSRFFFPFSFLILNV 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,679
Number of Sequences: 438
Number of extensions: 1135
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)