Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20803
         (371 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52860.1 68418.m06561 ABC transporter family protein                28   2.3  
At1g50620.1 68414.m05688 PHD finger family protein contains Pfam...    27   3.0  
At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative (CH...    27   4.0  
At4g03470.1 68417.m00474 ankyrin repeat family protein contains ...    26   9.2  

>At5g52860.1 68418.m06561 ABC transporter family protein 
          Length = 589

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 264 LLVVLWCFKIFLIFSITFRFLIYIYKFFVDFSYLLLDIFKT*IHCFGF-SFFQTLSPRHL 88
           L+ + + F I +I+S++  FLI +   +  F Y +L I+   +    F  F  +L+P ++
Sbjct: 411 LVFLPYLFVISIIYSVSVYFLIGLCPTWQAFGYFVLVIWIILLMANSFVLFLSSLAPNYI 470

Query: 87  ENISL 73
              SL
Sbjct: 471 TGTSL 475


>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 629

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 243 STKEPPVKKKQPVSKEELNKTTE 311
           + +E PVKKK+P   EE+N+  E
Sbjct: 24  TVEESPVKKKKPRFDEEVNRVAE 46


>At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative
           (CHX28) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 732

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 156 DIFKT*IHCFGFSFFQTLSP 97
           D+  T ++CFGF FF T  P
Sbjct: 185 DMISTLLYCFGFIFFPTEKP 204


>At4g03470.1 68417.m00474 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 683

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 345 LTLSIDPFFQFLQSFY*VPLLILAVSFLLVVLWCFKIFLIFSITF-RFLIYIYKFFVDFS 169
           ++L    +F  L  F+ + +    V +L+ V++C  IF I ++ F RF+ ++   +   S
Sbjct: 581 ISLYFAMYFMTLAFFFVMVIAAGNVRWLVYVIFCL-IFSILTLAFSRFMPHLLLHYCGSS 639

Query: 168 YLLL 157
           Y L+
Sbjct: 640 YKLM 643


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,367,493
Number of Sequences: 28952
Number of extensions: 75850
Number of successful extensions: 286
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)