Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20799
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6F885 Cluster: Putative uncharacterized protein; n=2; ...    36   1.3  
UniRef50_UPI00005FA423 Cluster: hypothetical protein YintA_01002...    33   8.9  

>UniRef50_Q6F885 Cluster: Putative uncharacterized protein; n=2;
           Acinetobacter|Rep: Putative uncharacterized protein -
           Acinetobacter sp. (strain ADP1)
          Length = 306

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = -3

Query: 678 FICARVVRDCFTETAKEHFSAGTRGVKLCELFYFVYLVFLQV*MCNNGGLLTV 520
           FI AR+V + F  T  + F+A  R V    +FYF++L+F+   +   G  L+V
Sbjct: 40  FIFARLVSNTFIRTIGQRFNAHQRMVWRRGIFYFIFLIFVMASLKEAGFKLSV 92


>UniRef50_UPI00005FA423 Cluster: hypothetical protein
           YintA_01002279; n=1; Yersinia intermedia ATCC 29909|Rep:
           hypothetical protein YintA_01002279 - Yersinia
           intermedia ATCC 29909
          Length = 609

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -2

Query: 535 WFTNCLISVKCTNVGKRNKAVGRIFSGSPKKSTEKISV 422
           W+T+ L+++ CT++  +  +  + F  + KK +E+ SV
Sbjct: 436 WYTSILVNITCTHIENKENSTSKNFHITEKKPSEEYSV 473


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,522,857
Number of Sequences: 1657284
Number of extensions: 12126841
Number of successful extensions: 25079
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25078
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)