Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20799
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.4  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    26   4.5  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   7.9  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   7.9  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   7.9  

>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 477 PLGVSSRDPPKSPLKK 430
           PL VS R PPK PL+K
Sbjct: 298 PLHVSPRKPPKPPLRK 313


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 415 GHLLRFFQWTFWGIPRRYAQ 474
           G  + FFQW FWG    ++Q
Sbjct: 87  GLCVSFFQWYFWGYSLAFSQ 106


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 596 NFTPRVPAEKCSFAVSVKQSLTT 664
           +F  ++P+EK SF  S+ ++LTT
Sbjct: 330 SFPEKLPSEKVSFMESLSKNLTT 352


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -3

Query: 480 KPLGVSSRDPPKSPLKKSQ*MTTILLRLHFIPYHLI 373
           +P  ++S + P    ++S  + T L +  +IPYH++
Sbjct: 608 RPASLTSEEKPTFTPEESWTLITYLSQHEYIPYHML 643


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 457 GSPKKSTEKISVNDHHFTEITFHPISSN 374
           G+P  +T  + VN+    + +  PISSN
Sbjct: 831 GNPSNNTSDVEVNETSMNDNSEEPISSN 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,472
Number of Sequences: 5004
Number of extensions: 53824
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)