Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20799
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0266 - 21415912-21418563                                         30   1.5  
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502     28   6.2  
11_06_0541 + 24771145-24775479                                         28   6.2  
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515...    28   6.2  

>02_04_0266 - 21415912-21418563
          Length = 883

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 175 NILQFLFFRDFMTWLLRPLSHV 240
           N LQ LFF  ++ WL+ PL HV
Sbjct: 243 NKLQPLFFNGYLHWLINPLHHV 264


>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
          Length = 1385

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 417  SFTEIFSVDFLGDPEKIRPTALFRFPTLVHFTDIKQLVNHRYYTFKPEE 563
            SFT I S+D +GD  ++    L R   L+  +++ + +     TFK +E
Sbjct: 1102 SFTNIESLDGVGDLPRLEELELKRNRFLLSLSEVGETLEKYMLTFKKDE 1150


>11_06_0541 + 24771145-24775479
          Length = 1444

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 417  SFTEIFSVDFLGDPEKIRPTALFRFPTLVHFTDIKQLVNHRYYTFKPEE 563
            SFT I S+D +GD  ++    L R   L+  +++ + +     TFK +E
Sbjct: 1160 SFTNIESLDGVGDLPRLEELELKRNRFLLSLSEVGETLEKYMLTFKKDE 1208


>02_01_0690 -
           5152224-5152386,5152490-5152687,5152815-5153014,
           5153122-5153223,5153414-5153550,5153688-5153798,
           5156092-5156344,5157954-5158052,5158449-5158739
          Length = 517

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +3

Query: 405 VKWWSFTEIFSVDFLGDPEKIRPTALFRFPTLVHFTDIKQLVNHRYYTFKPEETL 569
           V+   +  IF  DF  DP+ +R T     P LVH +DI  LV  R+     +E L
Sbjct: 172 VRECEYVAIFDADFQPDPDFLRRT----IPFLVHNSDI-ALVQARWRFVNADECL 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,530,378
Number of Sequences: 37544
Number of extensions: 338187
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)