Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20799
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81557-6|CAB04529.1|  357|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z74030-9|CAA98435.1|  188|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z81557-6|CAB04529.1|  357|Caenorhabditis elegans Hypothetical
           protein F59A1.12 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 321 SMINLIH*STGMKLNEMRLDDMG*NVISVKWWSFTEIFSV 440
           S+IN++  S  M LNE++  ++    I   WW FT   ++
Sbjct: 73  SIINILACSFEMVLNEIQTSNINYVKIGHSWWHFTRFETI 112


>Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical
           protein C38D9.8 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 411 WWSFTEIFSVDFL--GDPEKIRPTALFRFPTLVHFTDIKQLVNHRYYTFKPEETLNRQNK 584
           W S  +I++VD+L  G    +  T L RF   + F D   + NH    F   + L + N 
Sbjct: 164 WSSSDKIYNVDYLFVGHSGNMALTDLLRFNNRIVFLDRVSISNHTIRNFL--QVLKKSNS 221

Query: 585 TIHTTSL 605
            +   ++
Sbjct: 222 QLEVLTI 228


>Z74030-9|CAA98435.1|  188|Caenorhabditis elegans Hypothetical
           protein D1054.10 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 69  GDVRSSSSNRFFMLRSRHRNGHGNRFNQQ 155
           GD+  ++ N F +L  RH   H +R N +
Sbjct: 22  GDITYNNHNNFHVLHDRHHRSHHSRSNSR 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,326,737
Number of Sequences: 27780
Number of extensions: 307731
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)