Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20796
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   3.1  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   5.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.5  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 424 TTVHTATEEVRSERWREMQESRNND 498
           TTV +  E V+ E  +E  +S NN+
Sbjct: 441 TTVFSNVEVVQEEAKKEESDSNNNN 465


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 260 WQGKGKGNGAPNGRNW 307
           WQ  G+  G    RNW
Sbjct: 116 WQDSGESPGFTTERNW 131


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 514 NTSHRXRYFDFLAFRAIFRFG 452
           N S    YF +L+F + FR+G
Sbjct: 577 NVSSIPIYFKWLSFLSWFRYG 597


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 514 NTSHRXRYFDFLAFRAIFRFG 452
           N S    YF +L+F + FR+G
Sbjct: 577 NVSSIPIYFKWLSFLSWFRYG 597


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 236 LQNVDPVFWQGKGKGNGAPNGRNWIHAPD 322
           LQN     W  + K   A NG  WI   D
Sbjct: 377 LQNGATYIWDDEMKVPYAVNGDQWIGFDD 405


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,925
Number of Sequences: 336
Number of extensions: 2223
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)